Protein Model on 5z15_A_1_I_1 (TEMPLATE: 5z15 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [743 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b I 1 (A) non-polymer(7VL) 4-(7-chloranylquinolin-4-yl)-2-methyl-phenol 420S(F) 421K(F) 444G(A) 445Q 446E(V) (identity: 20.0 %/31.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5z15_A_1 identity=31.1%
queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
5z15_A_1      24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr          :EEE  SS  SS  S   SS SEEE  SS   EE TTTTTT TT  EEE  S S  -----------   EE TTTTTT TT  EEE  SS  SS  S---:    
ExpBur          :bbebeebebeebbeebeeebbebebbebebeebeeebbeebeebeebbbbebeee-----------eebebeeebbeebeebeebbbbebebeebbb---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
                :     **** *  * *  *         **  * *  *     *       *                              *  * ***  *     * :
5z15_A_1     121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr          :S  TT SEEE  SS   EE HHHHTT TT SEEE  SSBSS -SS SS EE TTTTTT TT  EEE  SB  SS  SS  TT SEEE TTS   EE TTT:    
ExpBur          :bbbebbeebbbbebebeebeeebbbebeebeebbbbbbbeee-eebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbebebeebbeee:    

queryA       191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
                :     *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *    :
5z15_A_1     220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr          :TTT TT  E--EE TTS-----S   TT SS    ----- STT   EE TTTTTT TT  EEE TTS  S   GGGGTT T--T  EEE  SS  HHHH:    
ExpBur          :beebeebbb--bbbbbb-----bbbbeeeeeeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebe--ebebbbbbbbebbebb:    

queryA       289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
                :        ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **:
5z15_A_1     306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr          :HS GGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE -TT   SEE------ GGGGTGGGT TT  EEE  SS   EE GGGGGG TT :    
ExpBur          :eebebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbb-ebbbbbeb------eeebbebbbebeebbbbbbbbbebeebebebbeebeeb:    

queryA       382:KYLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE: 442
                :    *                                       **     * *               * *  * *  *    *  *     * *  * :
5z15_A_1     399:EIIYLSENRISPLVXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANS: 494
SecStr          : EEE TT       --------------------------- TTS SSS  S SS HHHHTTS E----EE TTS  SS  TTTTTT    SEEE  SS :    
ExpBur          :ebbbbbebebebee---------------------------eeeeeebbeeeebbeeebeeeeeb----bbbbebebeebbeebbeebbebbbbebbebe:    
Contact         :                                                                             bb                     

queryA       443:IGQELTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGL: 529
                :  * * * *               *** ** *   *     *  *    *              *       *   **  * ** ***    *   **  :
5z15_A_1     495:NAQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESK: 586
SecStr          :   B  S SSTTSTT -------- EEE  SS  B  STTTTTT TT  EEE TT   TT  S   B   GGGG SS  EEE TTS    B S  S  BS:    
ExpBur          :bebebebebbeebeeb--------ebbbbbebebebeeeebbebbeebebbbbbebeebeeeeeeebbbebbeebeebeebebbebebeebeeeeebebe:    
Contact         : bbb                                                                                                

queryA       530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------: 592
                :   *      * *  **        *   ***  *  * *  *    ** * *      * ** * *                                 :
5z15_A_1     587:SLVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDS: 684
SecStr          :S  EEE-  SS HHHHH-H TT TTTTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGS TT  EEE  SS      S :    
ExpBur          :bbeebb-bbbbebeebb-eeeeeebbebbeebeebeebbbbebebeebbeebbebbbebbbebbbbebebeebebebbeebeebeebbbeebebeebbee:    

queryA       593:------------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN-LTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCN: 678
                :            *  *    **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     * :
5z15_A_1     685:LSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALXXXXXTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICA: 782
SecStr          :STTT SS  EEE  SS      TTSSTTT S  EEE  SS      TTT -----    EEE TT  EE SST-THHHHHHHHH TTSB   GGG- BEE:    
ExpBur          :bbebbebbebbbbbebebeebbeebbeebeebeebbbbebebeebeeebe-----eebeebebbebebebeee-beebbebbeeeeebebbebbe-bebe:    

queryA       679:TPPHYHG: 685
                : *    *:
5z15_A_1     783:SPGDQRG: 789
SecStr          :ESTTTTT:    
ExpBur          :eeeebee:

Input Residue Numbers for Focused Sites

ex) 2,15,123