Protein Model on 5z14_B_1_F_1
(TEMPLATE: 
5z14
)Protein Model on 5z14_B_1_F_1
(TEMPLATE: 5z14
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [734 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | F 1 (F) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 175E(K) 177L(F) 179S 199L 203E(D) 205S 252N(Y) 254S(N) 280D 387S 388N 389S(F) 390F(Y) (identity: 46.2 %/30.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5z14_B_1 identity=30.6% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
: * ** * ** * * * * * ** * * * * * * * * :
5z14_B_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPXXXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr :EEE SS SS S TT SEEE SS EE TTTSSS S EEE TT -------------- EE TTTTTT TT EEE SS SS S---:
ExpBur :bbebeebebeebbeebeeebeebebbebebeebeeebbeebeebeebbbbebe--------------ebebeebbbeebeebeebbbbebebeebbb---:
queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
: **** * * * * ** * * * * * * * *** * * :
5z14_B_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr :S TT SEEE SS EE HHHHTT TT EEE SSSSS -SS SS EE TTTTTS TT EEE SS SS S TT EEE SS EE TTT:
ExpBur :ebbebbebbbbbebebbebeeebbbebeebeebbbbbbbeee-eebeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbebebeebeeeb:
Contact : b b b
queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
: * * * ** * * ** * * * * * * ** * * * *** * * :
5z14_B_1 220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr :TTT TT E--EE TTS-----S TT SS -----SSSS EE TTTTTT TT EEE SS S GGGGTT T--T EEE SS HHHH:
ExpBur :beebeebbb--bbbbbb-----bbbbeeeeeeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebe--ebebbbbbebebbebb:
Contact : b b b b b b
queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
: ** ** * * * ** * * * * * * * *** * * * * * * * **:
5z14_B_1 306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr :HS SGGGG TT EEE S TT SB GGGGG TT EEE -TT SEE------ GGGGSTTSS TT EEE TT EE GGGGGS SS :
ExpBur :eebebbeebeebeebbbbbbeeeeeeeeebebbebbeebeebebbbb-bbbbbbeb------eeebbebbbebeebbbbbbbbbebeebebebbeebeeb:
queryA 382:KYLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE: 442
: * ** * * * * * * * * * * * * :
5z14_B_1 399:EIIYLSENRISPLVXXXXXXXXXXXXXXXXXXXXXXXXXXXDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANS: 494
SecStr : EEE SS --------------------------- SS SSS S SS HHHHTTS E----EE TTS SS TTTTTT SEEE SS :
ExpBur :ebbbbbebebebee---------------------------eeeeeebeeeeebbeeebeeeeeb----bbbbebebeebbeebbeebbebbbbbbbebe:
Contact : bbbbb
queryA 443:IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF------------QPLRNLTILDLSNNNIANINDDM-LEGL: 529
: * * * * *** ** * * * * ** * ** *** * ** :
5z14_B_1 495:NAQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFXXXGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESK: 586
SecStr : B S SSTTSTT --------SEEE TTB B STTTTTT TT EEE SB --- B GGGGG SS EEE TT B S EES:
ExpBur :bebebebebbeebeeb--------ebbbbbebebebeeeebbebbeebebbbbbebeeee---eeebbbebbeebeebeebbbbebebeebeeeeebebe:
queryA 530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------: 592
: * * * ** * *** * * * * ** * * * ** * * :
5z14_B_1 587:SLVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDS: 684
SecStr :S EEE- SS HHHHT-T SS TTTTTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S :
ExpBur :bbeebb-bbbbebbebb-eeeeeebbbbbebbeebeebbbbebebeebbeebbebbbebbbebbbbebebeebebebbeebeebebbbbebbebeebbee:
queryA 593:------------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK-KVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCN: 678
: * * ** *** * * ** * * * *** *** * * * * ** * * :
5z14_B_1 685:LSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKXXXXXXXXXKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICA: 782
SecStr :HHHH S EEE SS TTSSTT TT EEE SS S --------- EEE S EE SST-T HHHHHHHH SSSB GGG- BEE:
ExpBur :beebbebbebbbbbebebeebbeebeeebebbeebbbbebebeebee---------ebeebbbbebebebeee-beebeeebeeeeebebbebbb-bebe:
queryA 679:TPPHYHG: 685
: * *:
5z14_B_1 783:SPGDQRG: 789
SecStr :ESTTSTT:
ExpBur :eeeeeee:
|
[assembly_id:1]
[help]