[pdbjlvh2]Protein Model on 5y3m_A_1_C

Protein Model on 5y3m_A_1_C_1 (TEMPLATE: 5y3m )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [738 aa]	Toll-like receptor 9 :TLR9_BOVIN
2	b		C 1 (F)	polymer(polydeoxyribonucleotide) [5 base]	DNA (5'-D(TPCPGPT)-3')	420S(D) 422I(Y) 449G 450Q(V) 454G 455L(H) 482L(R) 483Q(V) (identity: 25.0 %/31.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5y3m_A_1 identity=31.7%

queryA       360:LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF: 459
                :*    *    *   *** *  *  * **    *        ** *    *  * *  **        *  *  ** ***  *       *    *    *:
5y3m_A_1     455:LDLSRNNLVTIQQEMFTRLSRLQCLRLSHNSIS-QAVNGSQFVPL--TSLRVLDLSHNKLDLYHGRSFTELPQLEALDLSYNSQPFSMQGV---GHNLSF: 548
SecStr          :EE  SS  SS  GGGGTT TT  EEE TTS   -    SSSSTT --TT  EEE  SS      TTTTTT TT  EEE TT  GGGGSTT ---    GG:    
ExpBur          :bbbbebebeebeeebbeebeebebbebbebebe-bebebebbebb--eebebbbbbebebebeeeebbbbbeebebbbbbebeebbeeeee---ebebeb:    
Contact         :                                                            b b                          bb   bb    

queryA       460:EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP--------------FQPLRNLTILDLSNNNIANINDDMLEGLEK-LEILDLQHNNLAR: 544
                :   *    ** *  *      *     *    *   * *                 *  ****  **** *         *  * * *  * *  **** :
5y3m_A_1     549:VAQLPSLRYLSLAHNG---IHSRVSQKLSSASLRALDFSGNSLSQMWAEGDLYLCFFKGLRNLVQLDLSENHLHTLLPRHLDNLPKSLRQLRLRDNNLAF: 645
SecStr          :GGG TT  EEE TTS ---  SSS S  EESS  EEE  SS HHHHHTSTTTTTTTTTEETT  EEE  SS  S   HHHHHTS TT  EEE TT   S :    
ExpBur          :beebeebeebbbbebe---beeebbeebebebbebbbbbbbbbeebbeeeeebbbbbeebeebbebbbbebebeebeeebbebbbeebeebebeebebee:    
Contact         :                      bb                                                                            

queryA       545:L-WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR: 643
                :  *           *  *  *  * *  *               *   *   *         *     *  ***  *    *    **     *  **  :
5y3m_A_1     646:FNWSS---------LTVLPRLEALDLAGNQLKALSNGSLPPGIRLQKLDVSSNSIGFVIPGFFVRATRLIELNLSANALKTVDPSWFGSLAGTLKILDVS: 736
SecStr          :  GGG---------GGGSTT  EEE TTS   EE SS   TT    EEE  SS   EE TTSSTT TT  EEE  SS  S   GGGTTTHHHH SEEE  :    
ExpBur          :bebeb---------beebeebebbbbbbbebebbbeebbbeebebeebbbbebebeebeeebbeebeebeebebbebebeebeeebbeebbeebeebbbb:    

queryA       644:FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG: 685
                : **  * *   * **    *     * **    *  *    *:
5y3m_A_1     737:ANPLHCACG--AAFVDFLLERQEAVPGLSRRVTCGSPGQLQG: 776
SecStr          :S  EE  TT-- THHHHHHHTGGGSTTTTTTSBEEESTTSTT:    
ExpBur          :ebebebeee--bebeebbbeeeebbebbbeebebbbeeeeee:

Protein Model on 5y3m_A_1_C_1 (TEMPLATE: 5y3m )

Input Residue Numbers for Focused Sites