Protein Model on 5y3k_A_1_C_2 (TEMPLATE: 5y3k )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [750 aa] Toll-like receptor 9 :TLR9_HORSE
2 b C 2 (E) polymer(polydeoxyribonucleotide) [6 base] DNA (5'-D(*GP*CP*GP*CP*AP*C)-3') 420S(D) 422I(Y) 449G 450Q(V) 454G 455L(H) 456E(N) 479V(R) 480P(V) (identity: 22.2 %/29.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5y3k_A_1 identity=29.0%
queryA        42:LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK--VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK: 139
                :** **  **     * *  *    *          *  **** *         *              *    **   **     *  * *   *     :
5y3k_A_1     190:LTTVPRSLPPSLEYLLLSYNHIVTLAPEDLANLTALRVLDVGGN---------CRRCDHARNPCVECPH-KFPQLHSDTFSHLSRLEGLVLKDSSLYQLN: 279
SecStr          : SS  SS  TT SEEE  SS   EE GGGGTT TT SEEE TTS---------SB GGG SS   B  T-T  EE TTTTTT TT  EEE TTS  SS  :    
ExpBur          :beebbeebbeebeebbbbbbebeebbeebbeebeebebbbbbbb---------bbbeeeeebeeeebee-eeeebeeebbeebeebebbbbebbbbeebe:    

queryA       140:NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE: 239
                :   *    **  **** * *      *                 * *            *  * ** *  *  *                   * **   :
5y3k_A_1     280:PRWFRGLGNLTVLDLSENFLYDCITKTKA--------------FQGL----------AQLRRLNLSFNYHKKVS--------------FAHLTLAPSFGS: 341
SecStr          :GGGGTT TT  EEE TTSS TTHHHH  T--------------TTT ----------TT  EEE TT   TT  --------------BS     GGGGG:    
ExpBur          :eebbeebeebbebbbbbbbbbebbeebeb--------------beeb----------eebeebebbbbbeeeee--------------eeebebbebbee:    

queryA       240:KLCL-ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI: 338
                : * * **    *   ***   *               *  * *  *  *      *   * * *  *  * *                            :
5y3k_A_1     342:LLSLQELDMHGIFFRSLSQKTLQPLA-------RLPMLQRLYLQMNFINQAQLGIFKDFPGLRYIDLSDNRISGAVEXXXXXXXXXXXXXXXXXXXXXXX: 434
SecStr          : TT  EEE TTS BSEE HHHHGGGT-------T TT  EEE  SS   EE GGGGTT TT  EEE  SS   SS  -----------------------:    
ExpBur          :bebbeebbbbbbbbeebeeebbebbb-------ebeebeebbbbebebeebebbbbeebeebebbbbbebebebeee-----------------------:    

queryA       339:SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL: 438
                :         **          *    *        **  *  *  * **    *        ** *    *  * *  **        *  *  ** ***:
5y3k_A_1     435:XXXXXXXSEDFMPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSIS-QAVNGSQFVPL--TSLQVLDLSHNKLDLYHGRSFTELPRLEALDL: 531
SecStr          :------- TTTS  STTSS EEE  SS  SS  GGGGTT TT SEEE  SS   -    S SSTT --TT  EEE  SS     STTTTTT TT  EEE :    
ExpBur          :-------eeebbeebeebebbbbbbebebeebeeebbeebeebebbebbebebe-bebebebbeeb--eebbbbbbbebebebeeeebbebbeebebbbb:    
Contact         :                                                                                 b b                

queryA       439:GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-----------FQPLRNLTILDLSNNNIANINDDMLE: 527
                :  *       *    *    *   *    ** *  *      * *       **     * *            ** ** *  **** *         * :
5y3k_A_1     532:SYNSQPFSMRGV---GHNLSFVAQLPTLRYLSLAHNGIHSRVSQQLCSTSLWALDFSGNSLSQMWAEGDLYLRFFQGLRSLIRLDLSQNRLHTLLPCTLG: 628
SecStr          : S HHHHHSTT ---    GGGGG TT  EEE TTS   SSS S  EESS  EEE  SS HHHHHHSTTSSTTTTTEETT  EEE  SS  S   HHHHH:    
ExpBur          :bebeebbeeeee---ebebebbeebeebebbbbbebebbeebbeebebebbebbbbbbbbbeebbeeeeebeebbbbbeebebbbbbebebeeeeeebbb:    
Contact         :          bb   bbb                      bb                                                          

queryA       528:GLEK-LEILDLQHNNLARL-WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV: 625
                : * * *  * *  * **   *           *  *  *  * *  *               *   *   *         *     *  ***  *    *:
5y3k_A_1     629:NLPKSLQLLRLRNNYLAFFNWSS---------LTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLDVSRNSIIFVVPGFFALATRLRELNLSANALRTV: 719
SecStr          :TS TT  EEE TT       GGG---------GGGSTT  EEE TTS  SEE SS S TT    EEE TTS   EE TTSSTT TT  EEE  SS  S  :    
ExpBur          :bbbeebebbbbeebebeebebeb---------beebeebebbbbbbbebebbbeeebbeebebeebbbbebebeebeeebbeebeebeebebbebebeeb:    

queryA       626:EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG: 685
                :*   **     *  **   **  * *   * **          * * *   *  *    *:
5y3k_A_1     720:EPSWFGFLAGSLEVLDVSANPLHCACG--AAFVDFLLQVQAAVPGLPSRVKCGSPGQLQG: 777
SecStr          : GGGGTT GGG SEEE  S  EE  TT-- HHHHHHHHTGGGSTTHHHH BEEESGGGBT:    
ExpBur          :eeebbbeebeebeebbbbebebebeee--eebbebbbebeebbebbbbebebebeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123