Protein Model on 5ijd_A_1_U_1
(TEMPLATE: 
5ijd
)Protein Model on 5ijd_A_1_U_1
(TEMPLATE: 5ijd
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [590 aa] | Toll-like receptor 4, Variable lymphocyte receptor B chimera :TLR4_MOUSE:Q4G1L2_EPTBU | |
| 2 | b | U 1 (D) | non-polymer(LP5) | (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE | 424S 445Q(R) 449G(F) 450Q(S) (identity: 25.0 %/27.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5ijd_A_1 identity=27.9% |
queryA 37:CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ: 136
:* ** **** * * * * * * * * ** * * * * * * * * * * * * :
5ijd_A_1 14:CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA: 113
SecStr : S SS SSS TT EEE S EE TTTTSS S EEE TT EE TT S S SS EEE TT SSSS TT EEE TTS :
ExpBur :beeeeeeebbeebeeebeebbbbebebeebeeeebeebeebeebbbbebebeebeeebbeebeebbebbbebbebeebeebbbbebeebebbbbbebebe:
queryA 137:KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLK--KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL: 233
: * * * ** * ** * ** ** * ** * * * * * * * * * * :
5ijd_A_1 114:SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG-NF: 211
SecStr : STT S TT EEE SS SGGGT TT EEE SS EE TTTTHHHHT TT EE TT EE TTTTTT -EEEEEEEES- :
ExpBur :ebeebebeebebbeebebbebebeebebbebbeebeebeebbbbebebeebeeebbebbeebeebebbbbbbebebeebeeebbeeb-ebebbbbee-bb:
queryA 234:GPSLTEKLCLE-LANTSIRNLSLS----NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL-: 327
: * * ** ** * * * ** * * * ** * ** :
5ijd_A_1 212:NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN-------------DFSDDIVKFHCLANVSAMSLAGV-SIKYLE: 297
SecStr :SSHHHHHHHHHTTTT EEEEEEEE TTS S GGGGTTSTTSEEEEEEE S-------------S GGGGG GGGTT SEEEEES - :
ExpBur :eeeeebeebbebbebbebeebbbbbeeeeeebeebebebbebbeebebeebebbbbe-------------ebeeebbebebbbebebbbbebb-ebeebe:
queryA 328:NLKRSFTKQSISL--ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD: 425
: * ** * * ** * * * * * * * ** ** * * * * * * * * :
5ijd_A_1 298:DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT-LTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCC--SYSDLGTNSLRHLDLSFNG-AIIMSA: 389
SecStr : TT SEEEEES SS TT EEE-EES SS B ---- TT EEE SS BEEEE --SHHHH S EEE S S-EEEE S:
ExpBur :ebeeebebeebbbeebebeebbebebeebeebb-bbebeeebebee----bebeebeebbbbebebebeebb--beebbbbeebebbbbbebe-ebebeb:
Contact : b
queryA 426:AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM: 525
: * * * ** ** ** * ** * * * *** **** * :
5ijd_A_1 390:NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQISWGV: 488
SecStr : TT TT EEE TTSEEESTTTTTTTTT TT EEE TTS EE GGGGTT TT EEE TT EEGG-GEE STTTT SEEE TTS EE SST:
ExpBur :ebebbeebeebbbeebebeebbeebbbebbeebeebbbbebebebeeebbbebbeebebbebbbbbbee-eebbebbeebeebeebbbbebebeebeebb:
Contact : b bb
queryA 526:LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV: 625
: * * * **** * * * * ** * * * * * ** * :
5ijd_A_1 489:FDTLHRLQLLNMSHNNL------------------------LFLDSSHYNQ--------LYSLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT------: 550
SecStr :TTT TT EEE SS ------------------------ TTTTTT-------- TT EEE SS TTTTTT TT EEE S------:
ExpBur :beebeebebbebbebeb------------------------eebeeebbee--------beebeebbbbebebebbeeebbeebeebeebebee------:
queryA 626:EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE: 663
: ** ** * * * * :
5ijd_A_1 551:-------------------NPWDCSCPRIDYLSRWLNK: 569
SecStr :-------------------S B TTTTHHHHHHHHH:
ExpBur :-------------------bebeeeeeebebbbebbee:
|
[assembly_id:1]
[help]