[pdbjlvh2]Protein Model on 5ijc_A_1_E

Protein Model on 5ijc_A_1_E_1 (TEMPLATE: 5ijc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [589 aa]	Toll-like receptor 4,Variable lymphocyte receptor B :TLR4_MOUSE:Q4G1L2_EPTBU
2	b		E 1 (E)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	174Q(V) 224F(H) 252N(R) (identity: 0.0 %/27.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5ijc_A_1 identity=27.7%

queryA        37:CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ: 136
                :*   **  * ** *       *  * *  *    *   * *  **     *   *      *  *  * *  *     *   *   * *  *        :
5ijc_A_1      55:CMDQKLSKVXDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA: 154
SecStr          : TTS  S  -  S TT  EEE  SS   EE TTTTTT TT  EEE TT    EE TTTTTT TT  EEE TT TT    TTTTTT TT  EEE TTS   :    
ExpBur          :beeeeeeeb-eebeeebeebbbbebebeebeeeebeebeebeebbbbebebeebeeebbebbeebbebbbebbebeebeeebbeebeebebbbbbebebe:    

queryA       137:KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLK--KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL: 233
                :     *      *  *   **   * **      * **    ** * **      *            *  * * *       *  *  *  * *     :
5ijc_A_1     155:SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG-NF: 252
SecStr          : STT S TT TT  EEE  SS        GGGGT TT  EEE  SS   EE TTTTHHHHH TT   EEE TT    EE TTTTTTE-EEEEEEEES-  :    
ExpBur          :ebeebebbebeebeebebbebebeebebbebbeebeebeebbbbebebeebeeebbebbeeeeebebbbbbbebebeebeeebbeeb-ebebbbbeb-bb:    
Contact         :                                      b                          b                        b         

queryA       234:GPSLTEKLCLE-LANTSIRNLSLS----NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL-: 327
                :  *   * **  **      * *        *         **         * * *                               ** *     ** :
5ijc_A_1     253:NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN-------------DFSDDIVKFHCLANVSAMSLAGV-SIKYLE: 338
SecStr          :SSHHHHHHHHHTTTTEEEEEEEEE  TTS   S   GGGGGGGGSSEEEEEEE   S-------------S  TTGGG GGGTT SEEEEES -      :    
ExpBur          :eebeebeebbebbbbbebebbbbbbeeeeeebeebeeebbebbeebebeebebbebe-------------ebeeebbebebbbebebbbbbeb-ebeebe:    
Contact         :                   b                                                                                

queryA       328:NLKRSFTKQSISL--ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD: 425
                :     *  ** *     *          ** *  * *    *   *      *  * ** **    *           *    *  * *  *    * * :
5ijc_A_1     339:DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT-LTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCC--SYSDLGTNSLRHLDLSFNG-AIIMSA: 430
SecStr          :   TT   SEEEEES   SS      TT  EEE-EES SS  B   ----   TT  EEE  SS  BEEEE --SGGGT  S   EEE  S S-EEEE  :    
ExpBur          :ebeeebebeebbbeebebeebbebebeebeebb-bbebeeebebee----bebeebeebbbbebebebebbb--beebbbbeebeebbbbebe-ebebee:    

queryA       426:AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM: 525
                : *  *  *  **                 **       **          *    **  *       *        *    *** ****      *    :
5ijc_A_1     431:NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQISWGV: 529
SecStr          :  TT TT  EEE TTSEEESGGGTTTTTT TT  EEE TTS  EE  TTTTTT TT  EEE TT EEGG-GEE S  TT TT  EEE TTS   EE TTT:    
ExpBur          :ebebbeebeebbbeebebeebbeebbbebbeebeebbbbebebebeeebbbebbeebebbebbebbbee-ebbbebbeebeebbebbbbebebeebeebb:    

queryA       526:LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV: 625
                :   *  *  *   ****                        * * *             *  **   *  * *   *   *    **    *        :
5ijc_A_1     530:FDTLHRLQLLNMSHNNL------------------------LFLDSSHYNQ--------LYSLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT------: 591
SecStr          :TTT TT  EEE  SS  ------------------------    GGGGTT-------- TT  EEE  SS  S   TTTTTT TT  EEE  S------:    
ExpBur          :beebeebebbebbebeb------------------------eebeeebbbe--------beebeebbbbebebebbeeebbeebeebeebebee------:    

queryA       626:EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE: 663
                :                   ** ** *  *     * * :
5ijc_A_1     592:-------------------NPWDCSCPRIDYLSRWLNK: 610
SecStr          :-------------------S B   TTTTHHHHHHHHH:    
ExpBur          :-------------------bebebeeeebebbbebbee:

Protein Model on 5ijc_A_1_E_1 (TEMPLATE: 5ijc )

Input Residue Numbers for Focused Sites