Protein Model on 5ijb_C_1_H_1 (TEMPLATE: 5ijb )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) C 1 (B) polymer(polypeptide(L)) [592 aa] Toll-like receptor 4, Variable lymphocyte receptor B chimera :TLR4_MOUSE:Q4G1L2_EPTBU
2 b H 1 (H) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 477A(L) 504P(N) (identity: 0.0 %/27.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5ijb_C_1 identity=27.9%
queryA        37:CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ: 136
                :*   **  **** *       *  * *  *    *   * *  **     *   *      *  *  * *  *     *   *   * *  *        :
5ijb_C_1      14:CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA: 113
SecStr          :  S   SS  SS  SS SEEE  S    SB TTTT S  S S EE TT    BB TTSSTT  S S EE  S    B  TTTTTT  S SEEE TTS   :    
ExpBur          :beeeeeeeebeebeeebeebebbebebeebebebbeebeebeebbbbebebeebeeebbebbeebbebbbebbebeebeeebbeebeebebbbbbebebe:    

queryA       137:KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLK--KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL: 233
                :     *      *  *   **   * **      * **    ** * **      *            *  * * *       *  *  *  * *     :
5ijb_C_1     114:SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG-NF: 211
SecStr          : TTTS  TT  S  EEE  SS        GGGGG TT  EEE TTS   EE TTTTHHHHT TT   EEE TT    EE TTTTTTE-EEEEEEEES-  :    
ExpBur          :bbeebebeebeebeebebbebebeebebbeebeebeebeebbbbebebeebbeebbebbeebeeeebbbbbbbbebeebeeebbeeb-ebebbbbeb-bb:    

queryA       234:GPSLTEKLCLE-LANTSIRNLSLS----NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL-: 327
                :  *   * **  **      * *        *         **         * * *                               ** *     ** :
5ijb_C_1     212:NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN-------------DFSDDIVKFHCLANVSAMSLAGV-SIKYLE: 297
SecStr          :S HHHHHHHHHTTTTEEEEEEEEE  TTS   S   GGGGTTTTTSEEEEEEE   S-------------S  GGGSS GGGTT SEEEEES -      :    
ExpBur          :eeeeebeebbeebeebebebbbbbbeeeeeebeebebebbebbeebebebbebbbbe-------------ebeeebbebebbbebebbbbbbb-ebeebe:    

queryA       328:NLKRSFTKQSISL--ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD: 425
                :     *  ** *     *          ** *  * *    *   *      *  * ** **    *           *    *  * *  *    * * :
5ijb_C_1     298:DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT-LTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCC--SYSDLGTNSLRHLDLSFNG-AIIMSA: 389
SecStr          :   TT   SEEEEES   SS      TT  EEE-EES SS      ----   TT  EEE TTS   EEEE -- GGGT  S   EEE  S S-EEEE S:    
ExpBur          :ebeeebebeebbbeebebeebbebebeebeebb-bbebeeebebee----bebeebeebbbbebebebeebb--beebbbbeebeebbbbebe-ebebee:    

queryA       426:AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM: 525
                : *  *  *  **                 **       **          *    **  *       *        *    *** ****      *    :
5ijb_C_1     390:NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQISWGV: 488
SecStr          :  TT TT   EE TTSEEETTTTS TTTT TT  EEE TTS  EE  TTTTTT TT  EEE TT EEGG-GEE S  TT TT  EEE TTS   EE TTT:    
ExpBur          :ebeebeebeebbbeebebeebeeebbbebbeebebbbbbebebebeeebbbebbeebeebebbebbbee-eebbebbeebeebeebbbbebebeebeeeb:    
Contact         :                                                   b                          b                     

queryA       526:LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV: 625
                :   *  *  *   ****                        * * *             *  **   *  * *   *   *    **    *        :
5ijb_C_1     489:FDTLHRLQLLNMSHNNL------------------------LFLDSSHYNQ--------LYSLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT------: 550
SecStr          :TTT SS  EEE  SS  ------------------------    TTTTTT-------- TT  EEE  SS      TTSSTT TT  EEE  S------:    
ExpBur          :beebeebebbebbebeb------------------------eebeeebbee--------beebeebbbbbbebeebeeebbeebeebeebebee------:    

queryA       626:EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE: 663
                :                   ** ** *  *     * * :
5ijb_C_1     551:-------------------NPWDCSCPRIDYLSRWLNK: 569
SecStr          :-------------------S EE  TTTTHHHHHHHHH:    
ExpBur          :-------------------bebebeeeebebbbebbee:

Input Residue Numbers for Focused Sites

ex) 2,15,123