Protein Model on 5ijb_A_1_B_1
(TEMPLATE: 
5ijb
)Protein Model on 5ijb_A_1_B_1
(TEMPLATE: 5ijb
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [593 aa] | Toll-like receptor 4, Variable lymphocyte receptor B chimera :TLR4_MOUSE:Q4G1L2_EPTBU | |
| 2 | b | B 1 (C) | polymer(polypeptide(L)) [136 aa] | Lymphocyte antigen 96 :LY96_MOUSE | 38S(M) 39H(D) 57N(D) 60H(F) 79S(W) 81D 83G(S) 84F(R) 107Q(T) 131M(V) 132S(E) 153D(N) 156H 177L(D) 179S 203E(D) 205S 229N(R) 280D(R) 283Y 319H(A) 320G 362M (identity: 30.4 %/27.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5ijb_A_1 identity=27.9% |
queryA 37:CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ: 136
:* ** **** * * * * * * * * ** * * * * * * * * * * * * :
5ijb_A_1 14:CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA: 113
SecStr : TT SS SSS SS SEEE TTS SB TTTTSS SEEE TT B TTTTTT TT EEE TT TTSSTT SS EEE TTS :
ExpBur :beeeebeeebeebeeebebbbbbebebeebeeeebeebeebeebbbbebebeebeeebbebbeebbebbbebbebeebeebbbeebeebeebbbbebebe:
Contact : bb b b b b bb b bb
queryA 137:KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLK--KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL: 233
: * * * ** * ** * ** ** * ** * * * * * * * * * * :
5ijb_A_1 114:SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG-NF: 211
SecStr : STT TT TT EEE SS GGGGG TT EEE SS EE TTTTHHHHH SS EEE TT EE TTTTTTE-EEEEEEEES- :
ExpBur :ebeebbbeebeebeebebbebebeebbbbebbeebeebeebbbbebebeebeeebbebbeeeeeeebbbbbbebebeebeeebbeeb-ebebbbbeb-bb:
Contact : b b b b b b b
queryA 234:GPSLTEKLCLE-LANTSIRNLSLS----NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL-: 327
: * * ** ** * * * ** * * * ** * ** :
5ijb_A_1 212:NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN-------------DFSDDIVKFHCLANVSAMSLAGV-SIKYLE: 297
SecStr :SSHHHHHHHHHHT SEEEEEEEEE TTS S GGGGTTTTTSEEEEEEE S-------------S GGGTT GGGGG S EEES - :
ExpBur :eebeebeebbebbeebebeebbbbbeeeeeebeebebebbebbeebebeebebbebe-------------ebeeebbebebbbebebbbbeeb-bbeebe:
Contact : bbb b b bb
queryA 328:NLKRSFTKQSISL--ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD: 425
: * ** * * ** * * * * * * * ** ** * * * * * * * * :
5ijb_A_1 298:DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT-LTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCC--SYSDLGTNSLRHLDLSFNG-AIIMSA: 389
SecStr : TT SEEEEES SS TT EEE-EES SS B ---- TT EEE TTS BEEEE -- GGGT S EEE S S-EEEE S:
ExpBur :ebeeebebeebbbeebebeebbebebeebeebb-bbebeeebebee----bebeebbebbbbebebebeebb--beebbbbeebeebbbbebe-ebebee:
Contact : b b
queryA 426:AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM: 525
: * * * ** ** ** * ** * * * *** **** * :
5ijb_A_1 390:NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQISWGV: 488
SecStr : TT TT EEE TT EEESTTTS TTTT TT EEE TTS EE GGGGTT TT EEE TT EEGG-GEE STTTT TT EEE SS EE TTT:
ExpBur :ebeebeebeebbbeebebeebeeebbbebbeebeebbbbebebebeeebbbebbeebebbebbebbbee-ebbbebbeebeebbebbbbebebeebeebb:
queryA 526:LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV: 625
: * * * **** * * * * ** * * * * * ** * :
5ijb_A_1 489:FDTLHRLQLLNMSHNNL------------------------LFLDSSHYNQ--------LYSLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT------: 550
SecStr :TTT TT EEE SS ------------------------ GGGTTT-------- TT EEE SS TTTTTT TT EEE S------:
ExpBur :beebeebebbebbebeb------------------------eebeebbbee--------beebeebbbbebebeebeeebbeebeebeebebee------:
queryA 626:EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE: 663
: ** ** * * * * :
5ijb_A_1 551:-------------------NPWDCSCPRIDYLSRWLNK: 569
SecStr :-------------------S B TTTTHHHHHHHHH:
ExpBur :-------------------bebebeeeebebbbebbee:
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[assembly_id:1]
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