Protein Model on 5hdh_A_1_J_1 (TEMPLATE: 5hdh )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [751 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b J 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 529L(K) 530E(S) 532L(V) 563H(N) (identity: 0.0 %/30.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5hdh_A_1 identity=30.7%
queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
5hdh_A_1      20:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 116
SecStr          :EEE  SS  SS  S   SS SEEE  SS   EE TTTS S  S  EEE  S S  ------------  EE TTTTTT SS  EEE  SS  SS  S---:    
ExpBur          :ebebbebebeebbeeeeeebeebebbebebeebeeebbeebeebbbbebbebeee------------ebebeebbbeebeebeebbbbebebeebbe---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
                :     **** *  * *  *         **  * *  *     *       *                              *  * ***  *     * :
5hdh_A_1     117:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 215
SecStr          :S  S  SEEE  SS   EE TTTTTT  S SEEE  SSS S -SS S  EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE  SS   EE TTT:    
ExpBur          :ebbebbebbbbbebbbeebeeebbbebeebeebebbebbbbe-eebeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebeeeb:    

queryA       191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
                :     *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *    :
5hdh_A_1     216:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 301
SecStr          :TTT TT  E--EE TTS-----S    S  TT   ----- GGG   EE TTTTTT TT  EEE  SS  S   GGGGTT T--T  EEE  SS  HHHH:    
ExpBur          :beebeebbb--bbbbbb-----bbbbeeeeeeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebebbbbeebe--ebebbbbbbbbbbebb:    

queryA       289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
                :        ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **:
5hdh_A_1     302:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 394
SecStr          :HH GGGGG TT  EEE  S   TTB  SB    GGGGG TT  EEE -TT   SEE------ GGGGGGGTT TT  EEE  S    EE GGGGGG SS :    
ExpBur          :eebebbeebeebbebbbbbbbeeeebeeebebbeebbebeebebbbb-bbbbbbeb------eeebbebbbebeebebbbbbbbebeebebebbeebeeb:    

queryA       382:KYLSLS-NSFTSLRTLTNETFVSLAHSPLHI----------------------------------LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446
                :    ** *    *                **                                  * *  * *  *    *  *     * *  *   * :
5hdh_A_1     395:EIIYLSENRISPLVXXXXXXXXNSSSFQRHIXXXXXXXXXXXPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 494
SecStr          : EEE  S       --------  B      -----------    SSS  S SS HHHHTTS EEE  SS  SS  TTTTTT    SEEE  SS     :    
ExpBur          :ebbbbbebebebee--------eeeeebeee-----------eeeeebbeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbbbebebe:    

queryA       447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533
                :* * *               *** ** *   *     *  *    *              *       *   **  * ** ***    *   **     *:
5hdh_A_1     495:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 586
SecStr          :  S TTTTSTT --------SEEE  SS      TTTTTT TT  EEE  S  HHHHSTT     GGGGG SS  EEE TTS     SS    EESS  E:    
ExpBur          :bebebbeebeeb--------ebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebbbeebbeeeebebebbee:    
Contact         :                                                                                               bb b 

queryA       534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592
                :      * *  **        *   ***  *  * *  *    ** * *      * ** * *                                     :
5hdh_A_1     587:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 684
SecStr          :EE- TTS HHHHH-HSSSSTTTTTTTEETT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S GGGT:    
ExpBur          :bb-bbbbbbbebb-eeeeeebbebbeebeebeebebbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebebbbbebbebeebbeebeeb:    
Contact         :                             b                                                                      

queryA       593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPH: 682
                :        *  *    **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     *  *  :
5hdh_A_1     685:TSSLRTLLLSHNRISHLPSGFLXXXSSLKHLDLSSNLLKTINKSALXXXXXXKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGD: 782
SecStr          : SS  EEE  SS      S   ---    EEE  SS  S       ------  SEEE TT  EE STT-HHHHHHHHHH TTSB S TTT- BEEESTT:    
ExpBur          :bebbebbbbbebebeebbebbe---eebeebbbbebebebbeeeee------eeeebbbbebebebeee-beebeebbeeeeebebeeebe-bebeeeee:    

queryA       683:YHGFPVRLFDTSSC: 696
                :  *          *:
5hdh_A_1     783:QRGKSIVSLELTTC: 796
SecStr          :TTT BTTT  GGGG:    
ExpBur          :beeebbbebeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123