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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [772 aa] | Toll-like receptor 7 :B3Y653_MACMU | |
2 | b | J 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 583K(R) 604S(R) 607N 610V(R) (identity: 25.0 %/32.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5gmh_A_1 identity=32.6% |
queryA 28:CTVSHEVADCSHLKLTQ-------------VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL: 114 :* ** * ** ** ** * * * * * ** ** * * * * * * : 5gmh_A_1 167:CYVSYSIEKDAFLNLTKLKVLSLKDNNVTTVPTVLPSTLTELYLYNNMIAEIQEDDFNNLNQLQILDLSGNC-----PR-CYNAP-FPCTPCKNNSPLQI: 259 SecStr : SS EE TTTTTT TT EEE SS S SS TT SEEE SS B TTTTTT TT EEE SSS----- - TT S-S STT B : ExpBur :beeebeeeeebbeebeebebbbbbbbebeebbeebbebbbebbbbbbebeebeeebbeebeebebbbbbbbb-----bb-eeeee-beeeeeeeeeebeb: queryA 115:SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP: 214 : * * * * * *** * * ** **** * * * * * * ** * * * * ** : 5gmh_A_1 260:PVNAFDALTELKVLRLHSNSLQHVPPRWFKNINNLQELDLSQNFLAK-EIGDAKFLHFLPNLI------------QLDLSFNFELQVYRASMNLSQAFSS: 346 SecStr : TTTTTT TT EEE SS S GGGGTT EEE SSS HH-HHTT GGGGG TT ------------EEE S TT BSS GGGGG: ExpBur :eeebbebbeebebbbbbbbbbeebeeebbeebeebeebbbbbbebbe-bbeebebbeebeebe------------ebbbbbbbeeeeeeeebebbebbee: queryA 215:GCFHAIGRLFGLF---LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ: 311 : * * * * ** * * * * ** *** * * * * * * : 5gmh_A_1 347:LKSLKILRIRGYVFKELKSFQLSP-------------------LHNLQ---------------NLEVLDLGTNFIKIANLSMFKQFKRLKVIDLSVNKIS: 412 SecStr : TT EEE S BSEE GGGGGG-------------------GTT T---------------T EEE SS EE GGGGGGGTT SEEE SS : ExpBur :beebebbbbbbbbbeebeeebbeb-------------------beebe---------------ebebbbbbebebeebebbbbeebeebebbbbbebebe: queryA 312:HLFSHS-------------------LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS: 392 : * * ** ** * * * * *** * * ** * ** *: 5gmh_A_1 413:PXXXXXXXXXXXXXXXXXXXXXXXVLEQLYYFRYDKYARSCXXXXXXXXXXXX----XXSCYKYGQTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLIS: 508 SecStr : ----------------------- SSSSSSS TT ------------------ GGGS EEE SS GGGGTT TT SEEE TTS : ExpBur :e-----------------------eeeeeebeebbeeeeee------------------ebeeeeebbbbbebebeebeeeebeebebbbbbbbbebebe: queryA 393:LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL: 492 : ** * ** * * * * ** * ***** * * * * * * ** ** : 5gmh_A_1 509:-QTLNGSEFQPLAE--LRYLDFSNNRLDLLHSTAFEELRKLEVLDISSNS--------HYFQSEGITHM-LNFTKNLKV----------LQKLMMNDNDI: 586 SecStr :- B S TTTT TT-- EEE SS B TTTTTT TT EEE TT --------GGGGSTT -GGGGGG TT---------- EEE S : ExpBur :-bebebebbebbee--bebbbbbebebbbeeeebbebbeebebbbbbebe--------eebeeeeeebb-bebbeebee----------beebbbbebeb: queryA 493:KNVDSSPSPFQPLRNLTI----LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL: 588 : * ** * ** * * *** ** * * * * * * * * ** * * *: 5gmh_A_1 587:SSSTSRTMESESLRTLEFRGNHLDVLWRDGDNRYLQLFKNLLKLEELDISKNSLSFLPSGVFDGMP-------PNLKNLSLAKNGLKSFIWEKLRYLKNL: 679 SecStr : SSS EESS EEE SS HHHHT TT TTTTTTTEETT EEE SS SS TTTTTTS -------TT EEE SS GGGGGG TT : ExpBur :eebebeebebebbebbbbebbebeebbeeeeeebbebbeebeebeebbbbebebeebbeebbebbb-------eebeebbbbebebeebebeebeebeeb: Contact : b queryA 589:KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR-------------------------NLTELDMRFNPFDCTCESIAWFVNWINE: 663 : ** * * * * * *** * * * * * * ** ** * * * *** *** * : 5gmh_A_1 680:ETLDLSHNQLTTVPERLSNCSRSLKNLILKNNQIRSLTKYFLQDAFQLRYLDLSSNKIQMIQKTSFPENVLNNLKMLLLHHNRFLCTCDAV-WFVWWVQH: 778 SecStr : EEE SS S GGGT SS EEE SS TTTTTT TT EEE SS GGGS HHHHTT SEEE S EE SGGGH-HHHHHHHH: ExpBur :ebbebbebebeebbeebbebbeebeebbbeebebeebbeebbeebeebeebbbbebbbeebeeebbeeebbeebeebbbbebebebeeebe-bbbebbbb: Contact : b b b queryA 664:THTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK: 697 :* ** * * * * * * * : 5gmh_A_1 779:TEVTIPYLATDVTCVGPGAHKGQSVISLDLYTCE: 812 SecStr : S TTTTTT BEEESGGGTT BGGG GGGG: ExpBur :bebebeeeeeebebebeeeeeeeebbebebeeee: |