[pdbjlvh2]Protein Model on 5gmf_A_1_H

Protein Model on 5gmf_A_1_H_1 (TEMPLATE: 5gmf )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [776 aa]	Toll-like receptor 7 :B3Y653_MACMU
2	b		H 1 (H)	polymer(polyribonucleotide)	RNA (5'-R(PUPUPUPU)-3')	325R 326Y 327L(D) 330K(A) 331R 332S 333F(C) (identity: 57.1 %/31.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5gmf_A_1 identity=31.3%

queryA        28:CTVSHEVADCSHLKLTQ-------------VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL: 114
                :* **        * **              **  **   * * *  *         *    **  **   *      *  *   *         *   * :
5gmf_A_1     167:CYVSYSIEKDAFLNLTKLKVLSLKDNNVTTVPTVLPSTLTELYLYNNMIAEIQEDDFNNLNQLQILDLSGNC-----PR-CYNAP-FPCTPCKNNSPLQI: 259
SecStr          : SS  EE TTTTTT TT  EEE  SS   S  SS  TT SEEE  SS   B  TTTTTT TT  EEE TTSS-----  - TT S-S     GGG   B :    
ExpBur          :beeebeeeeebbeebeebebbbbbbbebeebbeebbebbbebbbbbbebeebeeebbeebeebebbbbbbbb-----bb-eeeee-beeeeeeeeeebeb:    

queryA       115:SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP: 214
                :    *   * *  * * *** *      *    **  **** * *     *    *  *  *              **   *  *     * *    ** :
5gmf_A_1     260:PVNAFDALTELKVLRLHSNSLQHVPPRWFKNINNLQELDLSQNFLAK-EIGDAKFLHFLPNLI------------QLDLSFNFELQVYRASMNLSQAFSS: 346
SecStr          : TTTTTT TT  EEE TTS  S   GGGGTT     EEE  SSS HH-HHHH GGGGG TT  ------------EEE  S   TT  EEE    GGGGG:    
ExpBur          :eeebbeebeebebbbbbbbbbeebeeebbeebeebeebbbbbbebbe-bbeebebbeebeebe------------ebbbbbbbeeeeebebbebbebbee:    

queryA       215:GCFHAIGRLFGLF---LNNVQLGP--SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN: 309
                :     * *  *     *   ** *   *     * *    *    **                   *   *** *                         :
5gmf_A_1     347:LKSLKILRIRGYVFKELKSFQLSPLHNLQNLEVLDLGTNFIKIANLS------------MFKQFKRLKVIDLSVNKISPXXXXXXX-----XXXXXXXXX: 429
SecStr          : TT  EEE TT  EEEE GGGGGGGTT TT  EEE  SS   EE GG------------GGGGGTT SEEE  S     ---------------------:    
ExpBur          :beebeebbbbbbbbeebeeebbebbbebeebebbbbbbbebeebebb------------bbeebeebebbbbbebebee---------------------:    

queryA       310:IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL: 409
                :        *  *   **    **                      *    *    * *  ***  *  *  ** * **    *  **    *  **   *:
5gmf_A_1     430:XXXXXXXVLEQLYYFRYDKYARSCRFKXXXXXXXXX----XXSCYKYGQTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLIS-QTLNGSEFQPLAE--L: 522
SecStr          :-------   SS SS S TT   SS  ---------------  GGGS EEE  SS      GGGGTT TT SEEE TTS   -    S SSTT TT-- :    
ExpBur          :-------eeeeebbeeebbeeeeeeee---------------ebeeeeebbbbbebebeebebeebeebebbbbbbbbebebe-bebebebbebbee--b:    
Contact         :               bbb  bbbb                                                                            

queryA       410:HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT: 509
                :  *    *      * **  *  *****   *              * *    *   * *            ** **          *       ** * :
5gmf_A_1     523:RYLDFSNNRLDLLHSTAFEELRKLEVLDISSNS--------HYFQSEGITHM-LNFTKNLKV----------LQKLMMNDNDISSSTSRTMESESLRTLE: 603
SecStr          : EEE  SS      TTTTTT TT  EEE TT  --------GGGGSTT    -GGGGGG TT----------  EEE TT      SSS  EESS  EEE:    
ExpBur          :ebbbbbebebbbeeeebbebbeebebbbbbebe--------eebeeeeeebb-bebbeebee----------beebbbbebebeebebeebebebbebbb:    

queryA       510:I----LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV: 605
                :     **       *        * *** **   * *  *      * *         *  * *  **      *    *  *   **  * * * *   :
5gmf_A_1     604:FRGNHLDVLWRDGDNRYLQLFKNLLKLEELDISKNSLSFLPSGVFDGMP-------PNLKNLSLAKNGLKSFIWEKLRYLKNLETLDLSHNQLTTVPERL: 696
SecStr          : TTS HHHHT TT  TTTTTTTEETT  EEE  SS  S   TTTTTTS -------TT  EEE  SS      GGGGGG TT  EEE  SS      S G:    
ExpBur          :bebbebeebbeeeeeebbebbeebeebeebbbbebebeebbeebbebbb-------eebeebbbbebebeebebeebeebeebebbebbebebeebbeeb:    

queryA       606:FNNQVSLKSLNLQKNLITSVEKKVFGPAFR-------------------------NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP: 680
                : *   *** * *  * * *  *     **                          **  *    * * ***    *** *   *   ** *     *  *:
5gmf_A_1     697:SNCSRSLKNLILKNNQIRSLTKYFLQDAFQLRYLDLSSNKIQMIQKTSFPENVLNNLKMLLLHHNRFLCTCDAV-WFVWWVQHTEVTIPYLATDVTCVGP: 795
SecStr          :GGT SS  EEE  SS      TTTTTT TT  EEE TTS      TTTS HHHHTT SEEE  S  EE SGGGH-HHHHHHHH  S  TTHHHH BEEES:    
ExpBur          :bebbeebeebbbeebebeebbeebbeebeebeebbbbebbbeebeeebbbeebbeebeebbbbebebebeeebe-bbbebbeebebebeebeeebebebe:    

queryA       681:PHYHGFPVRLFDTSSC: 696
                :    *  *   *   *:
5gmf_A_1     796:GAHKGQSVISLDLYTC: 811
SecStr          :GGGTT BGGG   TT :    
ExpBur          :eeeeeeebbebebeee:

Protein Model on 5gmf_A_1_H_1 (TEMPLATE: 5gmf )

Input Residue Numbers for Focused Sites