Protein Model on 5gmf_A_1_C_1
(TEMPLATE: 
5gmf
)Protein Model on 5gmf_A_1_C_1
(TEMPLATE: 5gmf
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [776 aa] | Toll-like receptor 7 :B3Y653_MACMU | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [776 aa] | Toll-like receptor 7 :B3Y653_MACMU | 96Q(Y) 97K(N) 98L(A) 99P 101L(F) 102K(P) 247N(T) 249S(F) 283Y(V) 285N(K) 320G(Q) 321L 322F(Y) 323N(Y) 324V(F) 364D(K) 365N 366D(S) 368P(F) 388N(G) 389S(N) 390F(L) 392S 395T 418K(R) 420S(D) 451E(H) 452W(Y) 455L(S) 456E 457N(G) 458I 459F(T) 496D(T) 516N(R) 517N(D) 518I(G) 519A(D) 521I(R) 544R(F) 575D(K) 576E(S) (identity: 16.7 %/31.3 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5gmf_A_1 identity=31.3% |
queryA 28:CTVSHEVADCSHLKLTQ-------------VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL: 114
:* ** * ** ** ** * * * * * ** ** * * * * * * :
5gmf_A_1 167:CYVSYSIEKDAFLNLTKLKVLSLKDNNVTTVPTVLPSTLTELYLYNNMIAEIQEDDFNNLNQLQILDLSGNC-----PR-CYNAP-FPCTPCKNNSPLQI: 259
SecStr : SS EE TTTTTT TT EEE SS S SS TT SEEE SS B TTTTTT TT EEE TTSS----- - TT S-S GGG B :
ExpBur :beeebeeeeebbeebeebebbbbbbbebeebbeebbebbbebbbbbbebeebeeebbeebeebebbbbbbbb-----bb-eeeee-beeeeeeeeeebeb:
Contact : bbbb bb
queryA 115:SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP: 214
: * * * * * *** * * ** **** * * * * * * ** * * * * ** :
5gmf_A_1 260:PVNAFDALTELKVLRLHSNSLQHVPPRWFKNINNLQELDLSQNFLAK-EIGDAKFLHFLPNLI------------QLDLSFNFELQVYRASMNLSQAFSS: 346
SecStr : TTTTTT TT EEE TTS S GGGGTT EEE SSS HH-HHHH GGGGG TT ------------EEE S TT EEE GGGGG:
ExpBur :eeebbeebeebebbbbbbbbbeebeeebbeebeebeebbbbbbebbe-bbeebebbeebeebe------------ebbbbbbbeeeeebebbebbebbee:
queryA 215:GCFHAIGRLFGLF---LNNVQLGP--SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN: 309
: * * * * ** * * * * * ** * *** * :
5gmf_A_1 347:LKSLKILRIRGYVFKELKSFQLSPLHNLQNLEVLDLGTNFIKIANLS------------MFKQFKRLKVIDLSVNKISPXXXXXXX-----XXXXXXXXX: 429
SecStr : TT EEE TT EEEE GGGGGGGTT TT EEE SS EE GG------------GGGGGTT SEEE S ---------------------:
ExpBur :beebeebbbbbbbbeebeeebbebbbebeebebbbbbbbebeebebb------------bbeebeebebbbbbebebee---------------------:
Contact : b b b b
queryA 310:IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL: 409
: * * ** ** * * * * *** * * ** * ** * ** * ** *:
5gmf_A_1 430:XXXXXXXVLEQLYYFRYDKYARSCRFKXXXXXXXXX----XXSCYKYGQTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLIS-QTLNGSEFQPLAE--L: 522
SecStr :------- SS SS S TT SS --------------- GGGS EEE SS GGGGTT TT SEEE TTS - S SSTT TT-- :
ExpBur :-------eeeeebbeeebbeeeeeeee---------------ebeeeeebbbbbebebeebebeebeebebbbbbbbbebebe-bebebebbebbee--b:
Contact : bbbbb bbb b bbb b b
queryA 410:HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT: 509
: * * * ** * ***** * * * * * * ** ** * ** * :
5gmf_A_1 523:RYLDFSNNRLDLLHSTAFEELRKLEVLDISSNS--------HYFQSEGITHM-LNFTKNLKV----------LQKLMMNDNDISSSTSRTMESESLRTLE: 603
SecStr : EEE SS TTTTTT TT EEE TT --------GGGGSTT -GGGGGG TT---------- EEE TT SSS EESS EEE:
ExpBur :ebbbbbebebbbeeeebbebbeebebbbbbebe--------eebeeeeeebb-bebbeebee----------beebbbbebebeebebeebebebbebbb:
Contact : b b bb bbbbb b
queryA 510:I----LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV: 605
: ** * * *** ** * * * * * * * * ** * * * ** * * * * :
5gmf_A_1 604:FRGNHLDVLWRDGDNRYLQLFKNLLKLEELDISKNSLSFLPSGVFDGMP-------PNLKNLSLAKNGLKSFIWEKLRYLKNLETLDLSHNQLTTVPERL: 696
SecStr : TTS HHHHT TT TTTTTTTEETT EEE SS S TTTTTTS -------TT EEE SS GGGGGG TT EEE SS S G:
ExpBur :bebbebeebbeeeeeebbebbeebeebeebbbbebebeebbeebbebbb-------eebeebbbbebebeebebeebeebeebebbebbebebeebbeeb:
Contact : bbbb b b bb
queryA 606:FNNQVSLKSLNLQKNLITSVEKKVFGPAFR-------------------------NLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP: 680
: * *** * * * * * * ** ** * * * *** *** * * ** * * *:
5gmf_A_1 697:SNCSRSLKNLILKNNQIRSLTKYFLQDAFQLRYLDLSSNKIQMIQKTSFPENVLNNLKMLLLHHNRFLCTCDAV-WFVWWVQHTEVTIPYLATDVTCVGP: 795
SecStr :GGT SS EEE SS TTTTTT TT EEE TTS TTTS HHHHTT SEEE S EE SGGGH-HHHHHHHH S TTHHHH BEEES:
ExpBur :bebbeebeebbbeebebeebbeebbeebeebeebbbbebbbeebeeebbbeebbeebeebbbbebebebeeebe-bbbebbeebebebeebeeebebebe:
queryA 681:PHYHGFPVRLFDTSSC: 696
: * * * *:
5gmf_A_1 796:GAHKGQSVISLDLYTC: 811
SecStr :GGGTT BGGG TT :
ExpBur :eeeeeeebbebebeee:
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[assembly_id:1]
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