Protein Model on 5az5_C_1_M_1
(TEMPLATE: 
5az5
)Protein Model on 5az5_C_1_M_1
(TEMPLATE: 5az5
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | C 1 (C) | polymer(polypeptide(L)) [748 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
| 2 | b | M 1 (M) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 468Y 490V 510I(V) 512D(N) 533E 535L(V) (identity: 50.0 %/31.4 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5az5_C_1 identity=31.4% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
: * ** * ** * * * * * ** * * * * * * * * :
5az5_C_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr :EEE TTS SS TT TT SEEE TTS EE TTTTTT TT EEE TT S ----------- EE TTTT S TT EEE TTS SS S---:
ExpBur :bbebeebebeebbeebeeebbebebbebebeebeeeebeebeebbebbbbebeee-----------eebebeebbbeebeebeebbbbebebeebbe---:
queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
: **** * * * * ** * * * * * * * *** * * :
5az5_C_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr : TT SEEE TTS EE HHHHTT TT SEEE SSS TT- S EE TTTTTT TT EEE SS SS S TT SEEE TTS EE SST:
ExpBur :ebbebbbbbbbbbbebbebbeebbbebeebebbebbbbbbee-eeeeebebeeebbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeee:
queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
: * * * ** * * ** * * * * * * ** * * * *** * * :
5az5_C_1 220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr :TTT TT E--EE TTS-----S TT SS -----SGGG EE TTTTTT TT EEE TTS S GGGGTT T--T EEE SS THHHH:
ExpBur :beebeebeb--bbbbbb-----bbbbeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebe--ebebbbbbebebbebb:
queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
: ** ** * * * ** * * * * * * * *** * * * * * * * **:
5az5_C_1 306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr :HS GGGGG TT EEE S TT SB GGGGG TT EEE -TT SEE------ GGGGGGGTT SS EEE S EE GGGGGS S :
ExpBur :eebebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbb-bbbbbeeb------eeebbebbbebeebebbbbbebebeebebebbeebeeb:
queryA 382:KYLSLSNSFTS-------------------LRTLTNETFVSLAHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446
: ** * * ** ** * * * * * * * * * * * :
5az5_C_1 399:EIIYLSENRISPXXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 498
SecStr : EEE SS -------------------------- S TTS SSS S SS HHHHTTS EEE TTS SS TTTTTT SEEE TTS :
ExpBur :ebbbbbebebee--------------------------eeeeeeeebbeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebe:
Contact : b b
queryA 447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533
:* * * *** ** * * * * * * * ** * ** *** * ** *:
5az5_C_1 499:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 590
SecStr : S TTTTSTT --------SEEE TTS TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TTS SS EESS E:
ExpBur :bebebbeebeeb--------ebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebbbebbeeeeebebebbee:
Contact : b b b b b b b
queryA 534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592
: * * ** * *** * * * * ** * * * ** * * :
5az5_C_1 591:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 688
SecStr :EE- TTS HHHHT- TT TTTTTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS TTHHHH:
ExpBur :bb-bbbbbbeebb-eeebeebbebbeebeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebeeb:
Contact : b
queryA 593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPH: 682
: * * ** *** * * ** * * * *** *** * * * * ** * * * :
5az5_C_1 689:TSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGD: 786
SecStr : S EEE SS TT SSS TT SEEE SS S TT SS EEE TT EEE SGG-GHHHHHHHHH TTSB GGG-SEEEESTT:
ExpBur :bebbebbbbbebebeebbeebbbebebbeebbbbebebeebeeebbeeeeebebeebbbbebebebeee-bbebeebbeebeebebeebbe-bebeeeee:
queryA 683:YHG: 685
: *:
5az5_C_1 787:QRG: 789
SecStr :TTT:
ExpBur :eee:
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[assembly_id:2]
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