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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [750 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | E 1 (A) | non-polymer(IDQ) | 1-[[4-(aminomethyl)phenyl]methyl]-2-butyl-imidazo[4,5-c]quinolin-4-amine | 307Y(F) 309N(Y) 332S(G) 334T(V) 366D(F) 390F(R) (identity: 0.0 %/31.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5awd_A_1 identity=31.4% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119 : * ** * ** * * * * * ** * * * * * * * * : 5awd_A_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNXXXXXXXXXXXXNGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120 SecStr :EEE SS SS S TT EEE SS EE TTSSTT TT EEE S ------------ EE TTTTTT TT EEE SS SS S---: ExpBur :bbebeebebeebbeebbeebbebebbebebeebeeebbeebeebbbbbbbebee------------eebebeebbbeebeebeebbbbebebeebbe---: queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190 : **** * * * * ** * * * * * * * *** * * : 5awd_A_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219 SecStr :S TT SEEE SS EE HHHHTT TT SEEE SSS TT- EE TTTTTT TT EEE SS SS S TT SEEE TTS EE TTT: ExpBur :ebbeebebbbbbbbebbebbeebbbebeebeebebbbbbbee-eeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeee: queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288 : * * * ** * * ** * * * * * * ** * * * *** * * : 5awd_A_1 220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305 SecStr :TTT TT E--EE TTS-----S TT SS -----SGGG EE TTTTTT TT EEE TTS S GGGGTT T--T EEE TTS THHHH: ExpBur :beebeebeb--bbbbbb-----bbbbeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebbebbbeebe--ebebbbbbebebbebb: queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381 : ** ** * * * ** * * * * * * * *** * * * * * * * **: 5awd_A_1 306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398 SecStr :HH GGGGG TT EEE TT TT SS GGGGG TT EEE -TT SEE------ GGGGGGGTT TT EEE SS EE GGGGGGSS : ExpBur :eebebbeebeebeebbbbebbeeeeeeeebebbeebeebeebebbbb-bbbbbbeb------eeebbebbbebeebebbbbbebebeebebebbeebeeb: Contact : b b bbb b b b queryA 382:KYLSLSNSFTS-------------------LRTLTNETFVSLAHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446 : ** * * ** ** * * * * * * * * * * * : 5awd_A_1 399:EIIYLSENRISPLVXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 498 SecStr :SEEE SS ------------------------ S TTS SSS S SS HHHHTTSEEEE SS S TTTTTT EEEEE SS : ExpBur :ebbbbbebebeeee------------------------eebebeeebbeeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebe: Contact : b queryA 447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533 :* * * *** ** * * * * * * * ** * ** *** * ** *: 5awd_A_1 499:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 590 SecStr : S TTTTSTT -------- EEE SS TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TT SS BSS E: ExpBur :bebebbeebeeb--------ebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebbbbebebeebbeeeebebebbee: queryA 534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592 : * * ** * *** * * * * ** * * * ** * * : 5awd_A_1 591:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 688 SecStr :EE- TTS HHHHT- TT TTTTTTTTBTT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S GGGT: ExpBur :bb-bbbbbbeebb-eeebeebbebbeebeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbeebeeb: queryA 593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPH: 682 : * * ** *** * * ** * * * *** *** * * * * ** * * * : 5awd_A_1 689:TSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGD: 786 SecStr : SS EEE SS TT SSS TT EEE SS S GGGG S EEE TT EE SGG-GHHHHHHHHH TTSB GGG-SBEEESTT: ExpBur :bebbebbbbbebebeebbebbbbbbebbeebbbbebebeebeebbbeeeeebebeebbbbebebebeee-bbebeebbeeeeebebbebbb-bebbeeee: queryA 683:YHG: 685 : *: 5awd_A_1 787:QRG: 789 SecStr :TTT: ExpBur :bee: |