[pdbjlvh2]Protein Model on 5awc_A_1_T

Protein Model on 5awc_A_1_T_1 (TEMPLATE: 5awc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [749 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		T 1 (A)	non-polymer(M4D)	5-(4-azanylbutyl)-3-pentyl-quinolin-2-amine	446E(V) 475S(D) 477A(D) 494N(G) 495V 496D(T) (identity: 16.7 %/31.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5awc_A_1 identity=31.4%

queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
5awc_A_1      24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr          :EEE  SS  SS  S   TT  EEE TTS   EE TTTTTT TT  EEE  S S  ------------  EE TTTTTT TT  EEE TTS  SS  S---:    
ExpBur          :bbebbebebeebbeebeeebeebebbebebeebeeebbeebeebbebbbbbbbee------------ebebeeebbeebeebeebbbbbbebeebbe---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
                :     **** *  * *  *         **  * *  *     *       *                              *  * ***  *     * :
5awc_A_1     121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr          :S  TT SEEE  SS   EE HHHHTT TT SEEE  SSS TT-      EE TTTTTT TT  EEE  SS  SS  S   TT SEEE TTS   EE SST:    
ExpBur          :ebbeebeebbbbbbebbebeeebbbebeebebbebbbbbbee-eeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeee:    

queryA       191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
                :     *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *    :
5awc_A_1     220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr          :TTT TT  E--EE TTS-----S   TT SS    -----SGGG   EE TTTTTT TT  EEE TTS  S   GGGGTT T--T  EEE TTS  HHHH:    
ExpBur          :beebeebeb--bbbbbb-----bbbbeeeebebee-----beebeebebeeebbeebeebeebbbbbbbbeebeeebbeebe--ebebbbbbebebbebb:    

queryA       289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
                :        ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **:
5awc_A_1     306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr          :HS GGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE -TT   SEE------ GGGGGGGTT TT  EEE TTS   EE GGGGGGSS  :    
ExpBur          :eebebbeebeebbebbbbbbbeeeeeeeebebbeebeebebbebbbb-bbbbbeeb------eeebbebbbebeebebbbbbebebeebebebbeebeeb:    

queryA       382:KYLSLSNSFTS-------------------LRTLTNETFVSLAHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446
                :    **    *                           *    **       **           * *  * *  *    *  *     * *  *   * :
5awc_A_1     399:EIIYLSENRISPLXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 498
SecStr          :SEEE  SS     ------------------------  SS TTS SSS  S SS HHHHTTS EEE TTS   S  TTTTTT    SEEE TTS     :    
ExpBur          :ebbbbbebebebe------------------------eeebebeeebbeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebe:    
Contact         :                                                                                                   b

queryA       447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533
                :* * *               *** ** *   *     *  *    *              *       *   **  * ** ***    *   **     *:
5awc_A_1     499:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 590
SecStr          :  S TTTTSTT --------SEEE  S       TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TTS     SS     BSS  E:    
ExpBur          :bebebbeebeeb--------ebbbbbebebebeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebebbeeeeebebebbee:    
Contact         :                              b b                          bbb                                      

queryA       534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592
                :      * *  **        *   ***  *  * *  *    ** * *      * ** * *                                     :
5awc_A_1     591:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 688
SecStr          :EE- TTS HHHHT- TT  TTTTTTTTBTT  EEE TTS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      TTGGGT:    
ExpBur          :bb-bbbbbbeebb-eeebeebbebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebeeb:    

queryA       593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPH: 682
                :        *  *    **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     *  *  :
5awc_A_1     689:TSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGD: 786
SecStr          : S   EEE  SS      TTHHHH SS  EEE  SS      HHHH  SS     EEE TT  EE SGG-GHHHHHHHHTTTTSB   GGG-SBEEESGG:    
ExpBur          :bebbebbbbbebebeebbebbbbbbeebeebbbbebebebbeeebbeeeeebebeebbbbebebebeee-bbebbebbeeeeebebbebbb-bebeeeee:    

queryA       683:YHG: 685
                :  *:
5awc_A_1     787:QRG: 789
SecStr          :GTT:    
ExpBur          :bee:

Protein Model on 5awc_A_1_T_1 (TEMPLATE: 5awc )

Input Residue Numbers for Focused Sites