Protein Model on 4z0c_B_1_I_1 (TEMPLATE: 4z0c )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) B 1 (D) polymer(polypeptide(L)) [709 aa] Toll-like receptor 13 :TLR13_MOUSE
2 b I 1 (I) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 156H(R) 179S(T) 180N 232Q(R) (identity: 25.0 %/31.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4z0c_B_1 identity=31.0%
queryA        42:LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN: 141
                :**    * *   * ******    **   **  * *  *    * * *        *  *  ***  *         *     *  * *  * *  *   :
4z0c_B_1      26:LTEAISDIPRYTTHLNLTHNEIQVLPPWSFTNLSALVDLRLEWNSIWKIDEGAFRGLENLTLLNLVENKIQSVNN-SFEGLSSLKTLLLSHNQITHIHKD: 124
SecStr          :HHHHHTTS TT  EEE  SS   EE TTTTTT TT SEEE  SS   EE TTTTTT TT  EEE  SS   EE S-  TT TT  EEE  SS   EE TT:    
ExpBur          :beebbeebbeebeebebbebebeebeeebbeebeebebbebeebebeebeebbbeebeebebbbbbebebeebee-bbeebeebebbebbebebeebeee:    

queryA       142:PFVKQKNLITLDLSHNGLS--STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE: 239
                : *     *  * ** *  *  *  *     *  *  * * ** *  *           **  *    *   *     * *        *     *     :
4z0c_B_1     125:AFTPLIKLKYLSLSRNNISDFSGILEAVQHLPCLERLDLTNNSIMYLDHSPRSLV---SLTHLSFEGNKLRELN---FSALSLPNLTNLSASRNGNKVIQ: 218
SecStr          :SSTT TT  EEE  SS    HHHHHHHHTT TT  EEE  SS   S   S EE S---S  EEE TTS  S EE--- TTEE TT  EEE  S  SS B :    
ExpBur          :bbebbeebeebbbbebebeebeebbebbeebeebeebebbebebeebbeeebebe---ebbebbbebbebebbb---bebbebeebbebbbbebeeeebe:    
Contact         :              b                        bb                                                   b       

queryA       240:KLCLE-LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV------VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS: 332
                :   *  *      ***     *   *      *    *    *    *         **     ** **      *         *        * *   :
4z0c_B_1     219:NVYLKTLPQLKSLNLSGTVIKLENLSAKHLQNLRAMDLSNWELRHGHLDMKTVCHLLGN-----LPKLETLVFQKNVTNAEGIKQLAKCTRLLFLDLGQN: 313
SecStr          : EE TT TT  EEE TT  B GGG  GGG TT  EEE   SSGGG    HHHHHHHHTT----- TT  EEE  SSS  HHHHHHHHHH   SEEE TT :    
ExpBur          :ebebebbeebeebebbbbebebeebebeebeebebbbbbbeeeeeeebebebbbebbee-----beebeebbbbebbbebebbeebbeebebeebbbbeb:    

queryA       333:FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH: 432
                :          *    *  *  *  *  **        *       * **  * **             *  * *  *  * *  * *      *** *  :
4z0c_B_1     314:--------SDLIYLNDSEFNALPSLQKLNLNKCQLSFINNRTWSSLQNLTSLDLSHN--KFKSFPDFAFSPLKH--LEFLSLSRNPITELNNLAFSGLFA: 401
SecStr          :--------TT  EE SSTTTT TT SEEE TTS   EE TTTSTT TT  EEE  SS--  S   TTTTTT TT--  EEE TT   SS  GGGGTT TT:    
ExpBur          :--------eebeebeeebbeebebbeebbbbebebeebbeebbeebeebebbbbbeb--ebeebeeebbbbbee--beebbbbebbbeebeeebbebbee:    

queryA       433:LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL: 532
                :*  * *    *             *     *  *    *    *     ** * *    **     *  *  * **  ***  *           *****:
4z0c_B_1     402:LKELNLAACWI-VTIDRYSFTQFPNLEVLDLGDNNIRTLNHGTFRPLKKLQSLILSHNCLKILE--PNSFSGLTNLRSLDLMYNSLSYFHEHLFSGLEKL: 498
SecStr          :  EEE TTS  -    TTSSTT TT  EEE TTS   EE TTTTTT TT  EEE TTS   EE --TTTTTT TT  EEE  SS      TTTTTT TT :    
ExpBur          :beebbbbbbeb-eebeeebbeebeebeebebbebebeebeebbbeebeebeebebbebebeebe--eebbbbbeebeebbbbebbbeebeeebbeebeeb:    

queryA       533:EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN--------------NLNTLP--------------AS: 604
                : ** *  *             *   ** *  *  *     *    *   *  *  *    ** *              **  *               **:
4z0c_B_1     499:LILKLGFNKITYETTRTLQYPPFIKLKSLKQLN-LEGQRHGIQVVPSNFFQGLGSLQELLLGKNPSVFLDHHQFDPLINLTKLDISGTKDGDRSLYLNAS: 597
SecStr          : EEE TTS   BSS    SS TTTT TT  EEE- TT TT  EE  TTTTTT TT  EEE TT S EEE S TTTT TT  EEE     SHHHHEEE TT:    
ExpBur          :eebebbebebebeeeeebeebbbeebeebeebb-bbbbeebbebbbebbbeebebbebbbbbebebbebeeebbeebeebeebbbbbbeebeebbebeee:    

queryA       605:VFNNQVSLKSLNLQKN--------LITSVEK-KVFGPAFRNLTEL--------------DMRFNPFDCTCESIAWFVNW-INETHTNIPELSSHYLCNTP: 680
                : * *   ** * *  *           *     **   * **                 *   *   ***    ** **  *     ** * * * *  *:
4z0c_B_1     598:LFQNLKRLKILRLENNNLESLVPDMFSSLQSLQVFSLRFNNLKVINQSHLKNLKSLMFFDVYGNKLQCTCDNL-WFKNWSMNTEEVHIPFLRS-YPCQQP: 695
SecStr          :TTTT TT  EEE  SS      TTTTTT TT  EEE  SS      TTTTTT TT  EEE TTS   SSGGGH-HHHHHHHH SS B TTGGG- B SST:    
ExpBur          :bbeebeebebbbbeebebeebeeebbbebeebebbbbeebbbeebeeebbeebeebebbbbeebebeeeeebe-ebbeebeebeebbbbbbee-bebeee:

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