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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [749 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | V 1 (B) | non-polymer(UPT) | 1-[(2R,3aR,4R,6R,6aR)-2-hydroxy-6-(hydroxymethyl)-2-sulfidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]pyrimidine-2,4(1H,3H)-dione | 492L(I) 493K(A) 494N(G) (identity: 0.0 %/31.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4r09_A_1 identity=31.4% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119 : * ** * ** * * * * * ** * * * * * * * * : 4r09_A_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120 SecStr :EEE SS SS S TT SEEE TTS EE TTTTSS TT EEE S S ------------ EE TTTTTT SS EEE SS SS S---: ExpBur :ebebeebebeebbeebbeebeebebbebebeebeeebbeebeebeebbbbebeee------------ebebeeebbeebeebeebbbbbbebeebbe---: queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190 : **** * * * * ** * * * * * * * *** * * : 4r09_A_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219 SecStr :S TT SEEE SS EE HHHHTT TT SEEE SSS TT- EE TTTTTT TT EEE SS SS S TT SEEE TTS EE TTT: ExpBur :ebbebbbbbbbbbbebbebeeebbbebeebebbebbbbbbee-eeeeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeee: queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288 : * * * ** * * ** * * * * * * ** * * * *** * * : 4r09_A_1 220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305 SecStr :TTT TT E--EE TTS-----S TT SS ----- STT EE TTTTTT TT EEE TTS S GGGGTT T--T EEE SS HHHH: ExpBur :beebeebeb--bbbbbb-----bbbbeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebe--ebeebbbbebebbebb: queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381 : ** ** * * * ** * * * * * * * *** * * * * * * * **: 4r09_A_1 306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398 SecStr :HS GGGGG TT EEE S SS SB GGGGG TT EEE -TT SEE------ GGGGGGGTT TT EEE SS EE GGGGGG SS : ExpBur :eebebbeebeebbebbbbbbbeeeeeeeebebbeebeebeebebbbb-bbbbbbeb------eeebbebbbebeebebbbbbebebeebebebbeebeeb: queryA 382:KYLSLSNSFTS-------------------LRTLTNETFVSLAHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446 : ** * * ** ** * * * * * * * * * * * : 4r09_A_1 399:EIIYLSENRISPLXXXXXXXXXXXXXXXXXXXXXXXXDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 498 SecStr : EEE SS ------------------------ SS TTS SSS S SS HHHHTTS EEE SS S TTTTTT SEEE SS : ExpBur :ebbbbbebebebe------------------------eeeeebeeeebeeeeeebeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebe: queryA 447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533 :* * * *** ** * * * * * * * ** * ** *** * ** *: 4r09_A_1 499:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 590 SecStr : S TTTTSTT --------SEEE S TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TTS SS EESS E: ExpBur :beeebbeebeeb--------ebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebebbebbbeebeeeeebebebbee: Contact : bbb queryA 534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592 : * * ** * *** * * * * ** * * * ** * * : 4r09_A_1 591:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 688 SecStr :EE- SS HHHHT- TT TTTTTTTEETT EEE SS S HHHHHTS TT SEEE SS S GGGGGG TT EEE SS S GGGT: ExpBur :bb-bbbbbbeebb-eeebeebbebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebebbbbeebebeebbeebeeb: queryA 593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPH: 682 : * * ** *** * * ** * * * *** *** * * * * ** * * * : 4r09_A_1 689:TSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGD: 786 SecStr : S EEE SS TTTTSS TT EEE SS GGGT SS EEE TT EE SGG-GHHHHHHHHT TTSB GGG-SBEEESTT: ExpBur :bebbebbbbbebebeebbebbbbebebbeebbbbebebebbeeebbeeeeebebeebbbeebebebeee-bbebbebbeeeeebebeebbe-bebeeeee: queryA 683:YHG: 685 : *: 4r09_A_1 787:QRG: 789 SecStr :TTT: ExpBur :bee: |