[pdbjlvh2]Protein Model on 4qc0_A_1_J

Protein Model on 4qc0_A_1_J_1 (TEMPLATE: 4qc0 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [746 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		J 1 (A)	non-polymer(XG1)	2-butyl-2H-pyrazolo[3,4-c]quinolin-4-amine	475S(D) 477A(D) 494N(G) 495V 496D(T) (identity: 20.0 %/31.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:4qc0_A_1 identity=31.1%

queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
4qc0_A_1      24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr          :EEE  SS  SS  S   TT  EEE  SS   EE SSTTTT TT  EEE  S S  ------------  EE TTTTTT TT  EEE  SS  SS  S---:    
ExpBur          :bbebeebebeebbeebeeebeebebbebebeebeeeebeebeebbebbbbebeee------------ebebeebbbeebeebebbbbbebebeebbe---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
                :     **** *  * *  *         **  * *  *     *       *                              *  * ***  *     * :
4qc0_A_1     121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr          :S  TT SEEE TTS   EE HHHHTT TT SEEE  SSS TT- S    EE TTTTTT TT  EEE  SS  SS  S   TT SEEE TTS   EE SST:    
ExpBur          :ebbeebbebbbbebebbebbeebbbebeebebbebbbbbeee-eeeeebebeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeee:    

queryA       191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
                :     *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *    :
4qc0_A_1     220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr          :TTT TT  E--EE TTS-----S   TT SS    -----SGGG   EE TTTTTT TT  EEE TTS  S   GGGGTT T--T  EEE  SS  HHHH:    
ExpBur          :beebeebeb--bbbbbb-----bbbbeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebebebbeebe--ebebbbbbebebbebb:    

queryA       289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
                :        ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **:
4qc0_A_1     306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr          :HS GGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE -TT   SEE------ GGGGGGGTT TT  EEE  SS   EE GGGGGGSS  :    
ExpBur          :eebebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbb-bbbbbeeb------eeebbebbbebeebebbbbbebebeebebebbeebeeb:    

queryA       382:KYLSL---------------------------------------SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE: 442
                :    *                                       **     * *               * *  * *  *    *  *     * *  * :
4qc0_A_1     399:EIIYLSENRISPXXXXXXXXXXXXXXXXXXXXXXXXXXXEFDPHSNFYHFTRPLIKPQCAAYGKA----LDLSLNSIFFIGPNQFENLPDIACLNLSANS: 494
SecStr          : EEE  SS    ---------------------------   TTS SSS  S SS HHHHTTS E----EE  SS   S  TTTTTT    SEEE  SS :    
ExpBur          :eebbbbebebee---------------------------eeeeeeebbeeeeebbeeebeeeeeb----bbbbebebeebbeebbeebbebbbbbbbebe:    

queryA       443:IGQELTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGL: 529
                :  * * * *               *** ** *   *     *  *    *              *       *   **  * ** ***    *   **  :
4qc0_A_1     495:NAQVLSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESK: 586
SecStr          :      S TTTTSTT -------- EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TTS     SS     BS:    
ExpBur          :bebebebebbeebeeb--------ebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebebbebebeebbeeeebebe:    
Contact         :                                  b b                          bbb                                  

queryA       530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID---------------------------------: 592
                :   *      * *  **        *   ***  *  * *  *    ** * *      * ** * *                                 :
4qc0_A_1     587:SLVELV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDS: 684
SecStr          :S  EEE-  SS HHHHT- TT  TTTTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S :    
ExpBur          :bbeebb-bbbbbbeebb-eeebeebbebbeebeebeebbbbebebeebbeebbebbbeebeebbbbebebeebebebbeebeebeebbbeebebeebbee:    

queryA       593:------------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCN: 678
                :            *  *    **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     * :
4qc0_A_1     685:LSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICA: 782
SecStr          :GGGT SS  EEE  SS      TTSSTT  S  EEE  SS      HHHH   S     EEE TT  EE SGG-GHHHHHHHHHTTTSB   GGG-SBEE:    
ExpBur          :bbebbebbebbbbbebebeebbeebbeebebbeebbbbebebebbeeebbbeeeeeebeebbbbebebebeee-bbbbbebbeeeeebebbebbb-bebb:    

queryA       679:TPPHYHG: 685
                : *    *:
4qc0_A_1     783:SPGDQRG: 789
SecStr          :ESTTTTT:    
ExpBur          :eeeeeee:

Protein Model on 4qc0_A_1_J_1 (TEMPLATE: 4qc0 )

Input Residue Numbers for Focused Sites