Protein Model on 4lxs_A_1_H_1 (TEMPLATE: 4lxs )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [747 aa] Protein toll :TOLL_DROME
2 b H 1 (F) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 123T 147K(T) 148N (identity: 66.7 %/28.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4lxs_A_1 identity=28.6%
queryA        41:KLTQVPDDLPTNITVLNLTHNQLR----RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ: 136
                : **  *  * *     ** *  **      *   *     * *   * *           * * ** ***  * *  *    *   *         * * :
4lxs_A_1     134:RLTHIPANLLTDMR--NLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATSVLGIDIHDNGIE: 231
SecStr          :S     TTTTTT  --S  EEEEES      GGGTTS TT  EEE TTS   S  SS TTT TT  EEE  SS   S  GGGGTT SS  EEE  SS   :    
ExpBur          :eebebbbebbeebe--ebebbbbebebeebeeebbebbeebeebbbbebebeebbeebbeebeebeebebeebebeebeeebbeebeebebbbbeebebe:    
Contact         :                                                                                      b             

queryA       137:KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF--GLFLNNVQLG: 234
                :      *    *     ** *   *   *       * *  * **    *       ***      **   **           * **       *  **:
4lxs_A_1     232:QLPHDVFAHLTNVTDINLSANLFRSLPQGLFDHNKHLNEVRLMNNRV-PLATLPSRLFANQP----EL---QILRLRAELQSLPGDLFEHSTQITNISLG: 323
SecStr          :   TTTTTT TT  EEE TTS  S   TTTTTT TT  EEEE   SS-   B  TTTTTT T----T --- EEEE S   B  GGGGTT TT  BEE  :    
ExpBur          :ebeeebbbebeebbebbbbbbebeebeebbbeebeebebbebeebeb-ebeebeeebbbebe----eb---eebebebebeebbeebbeebeebbebebb:    
Contact         :          bb                                                                                        

queryA       235:PSLTEKLCLELANTSIR--NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS: 332
                :  *   *   *         * ***  *       *     **** * *  * *     * *  *  *       *      *         * * *   :
4lxs_A_1     324:DNLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLF--AHTTNLTDLRLEDNLLTGISGDIFSNLGNLVTLVMSRNRLRTIDSRAFVSTNGLRHLHLDHN: 421
SecStr          :SS  SB  GGGGSS TT  EEE  SS   B  TTTT--SS TT  EEE  SS      SSTTTT SS  EEE  SS      SGGGSS TT  EEE  SS:    
ExpBur          :ebebeebeeebbeebeebeebbbbebebeebeeebb--eebeebeebebbebebeebebebbeebeebebbbbbebebeebeeebbeebebbeebebbeb:    

queryA       333:FT--KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI: 422
                :     *      *       *     *  **   * *             *  * *  *      *  *    *    **  * * ***  *:
4lxs_A_1     422:DIDLQQPLLDIMLQTQINSPFGYMHGLLTLNLRNNSIIFVYNDWKNTMLQLRELDL--SYNNISSLGYEDLAFLSQNRLHV-NMTHNKIRRI: 510
SecStr          :   TT  HHHHHTT     TTTT TT  EEE TTS   S  THHHHT SS  EEE --TTS   EEETTTT     S EEE-E TTS   EE:    
ExpBur          :ebebebeeeebeeeeeeebbbeebebbbbbbbeebebbbbbbbbbeebeebeebbb--bebebeebbeebbebebebebeb-ebbebebeeb:

Input Residue Numbers for Focused Sites

ex) 2,15,123