Protein Model on 4g8a_A_1_P_1 (TEMPLATE: 4g8a )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [601 aa] Toll-like receptor 4 :TLR4_HUMAN
2 b P 1 (C) non-polymer(KDO) 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid 317S(Y) 363E(K) (identity: 0.0 %/30.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:4g8a_A_1 identity=30.2%
queryA        37:CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ: 136
                :*  *     ** **     * *  * ** *    *     *  **     *   *    * *  *  * *  *    *    *     *  *        :
4g8a_A_1      38:CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA: 137
SecStr          : TTS  SS  SSS TT  EEE TTS   EE TTTTTT TT  EEE TT    EE TTTTTT TT  EEE TT    EE GGGGTT TT  EEE TTS   :    
ExpBur          :beeeebeebbeebeeebeebbbbebbbeebbeebbebbeebeebbbbebebeebeebbbeebeebebbbbebbebeeeeebbbebbeebeebbbbebebe:    

queryA       137:KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFAN--SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL: 233
                :   * *    * *  *   **   * **      * **  * ** ****      *            * ** *      ** *  * **  * * *   :
4g8a_A_1     138:SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRN---: 233
SecStr          : STT   TT TT  EEE  SS        GGGGG TT  EEE  SS   EE GGGGHHHHT TT   EEE TT    EE TTTTTT -EEEEEEEES---:    
ExpBur          :ebeebbbbebeebeebebbebebeebebbebbeebeebeebebbebebebbeeebbebbeebeebebbbebbebebeebeeebbeeb-ebeebbbbb---:    

queryA       234:GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL-SYNNLNVVGNDSFAWLPQL--EYFFLEYNNIQHLFSHSLHGLFNVRYLNLK: 330
                :         *    * *  *                **    *         **          *  *  * * * *          * *       *  :
4g8a_A_1     234:-----NFDSLNVMKTCIQGLA---------------GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY------LDYYLDGIIDL--FNCL: 305
SecStr          :-----  SSHHHHHHHHHTTT---------------T EEEEEEEE  TTS   S   TTTTGGGGGSEEEEEEEE ------  S EEE TTT--TGGG:    
ExpBur          :-----bbeebeebeebbebbb---------------ebebebbbbbbeeeeebbeebeebbbebbeebebeebebbb------beeebeebeeb--bebb:    
Contact         :                                                                                      b             

queryA       331:RSFTKQSISLASLPKIDDFS--FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS: 428
                :      *          ***  * *   **  *      *  *                     *  *   ** *         *   *  *        :
4g8a_A_1     306:TNVSSFSLVSVTIERVKDFSYNFGW-QHLELVNCKFGQFPTLK---------------------LKSLKRLTFTS---------NKGGNAFSEVD-----: 369
SecStr          :TT SEEEEES EEEE GGGGS    -SEEEEES EESS    B--------------------- TT  EEEEES---------  S  B    B-----:    
ExpBur          :eebbbbbbbebebeebeebeeebeb-eebbbeebebeebbebe---------------------beebeebbbbe---------beeeeebeebe-----:    
Contact         :                                  b                                                                 

queryA       429:WLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE: 527
                : *  ** ***  *         *   *        ** *       * *     *  *      **   *  * *  ****  ** *             :
4g8a_A_1     370:-LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFNGIFN: 466
SecStr          :- TT  EEE  SS  BEEEE  HHHHS S   EEE  S SEEEE S - TT TT  EEE TTSEEEST-TSS TTTT TT  EEE TTS  EE  TTTTT:    
ExpBur          :-beebebbbbbebebebeebbbeebbebeebeebbbbebeebebebb-bebbeebeebbbeebebeeb-eeebbbebbeebebbbbbebebebeeebbbe:    

queryA       528:GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN---LNTLPASVFNNQVSLKSLNLQKNLITS: 624
                :**  ** *    *             *  *   *  *  * *            *  *  *       **   * * *    *   **  *    * *  :
4g8a_A_1     467:GLSSLEVLKMAGNSFQENFL------PDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN---SLQVLDYSLNHIMT: 556
SecStr          :T TT  EEE TT EEGGGEE------ S  TT- TT  EEE TTS   EE TTTTTT TT  EEE TTS   B   GGGTT T---T  EEE TTS   B:    
ExpBur          :bbeebebbebbebbbeeeeb------bebbee-beebeebbbbebebeebbeebbebbeebeebbbbebebeebebebbeebe---ebeebbbbebebeb:    

queryA       625:VEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPV: 688
                :  *         *  *    * * ****    *  **        *      * **    * **:
4g8a_A_1     557:SKKQELQHFPSSLAFLNLTQNDFACTCEHQS-FLQWIKDQRQLLVEV-ERMECATPSDKQGMPV: 618
SecStr          :  SS TT   TT  EEE TT  B  SGGGHH-HHHHHHHTTTTBS G-GG BB SSTTTTT BG:    
ExpBur          :beeebbeebbeebeebbbbebebbbeeebee-bbebbbeeeebbeee-eebebeebeeeeeeeb:

Input Residue Numbers for Focused Sites

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