Protein Model on 3zyj_A_1_B_1 (TEMPLATE: 3zyj )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [396 aa] LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4C :LRC4C_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [326 aa] NETRIN-G1 :NTNG1_HUMAN 411I 416K(R) 435V(T) 437D(E) 439G(F) 462Y(W) 464S(R) 484R 486M(D) 510I(Y) 515N(M) 534I(E) 538Q(S) 570E(I) 571S(Q) 592D(N) 595L(H) 639E(R) 641D(H) 644F(H) 669P(T) 670E(A) 672S(C) 674H(R) (identity: 8.3 %/34.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3zyj_A_1 identity=34.6%
queryA       400:TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS-S: 498
                : *  * *  * ** *  * *  **  **  *  *  * *  *       *     *    *  *  *         *   *** ** *    **     *:
3zyj_A_1      83:SFKHLRH--LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG-AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE--LKRLSYIS: 177
SecStr          :TTSS SS--  EEE  SS   EE GGGGTT SS  EEE  SS  SS  TT-TS S SS  EEE  S    EE TTTTTT TT  EEE   -- TT  EE :    
ExpBur          :ebbebee--beebbbbebebeebeebbbeebeebebbbbeebebeebbee-bbbebebbeebbbeebbbeebeeebbeebeebbebbbbe--beebeeeb:    
Contact         :           b    b                  b b b                      b b                   b b             

queryA       499:PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL: 598
                :   *  * **  * *   *   *    *  * **  ***  * *        **       ** **  *         *    *  *  *  * *  ***:
3zyj_A_1     178:EGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAI----RPGS----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL: 267
SecStr          :TTTTTT SS  EEE TTS  SS   -- TT SS  EEE TTS   EE---- TTT----TTT TT  EEE TT    EE TTSSTT TT  EEE TTS  :    
ExpBur          :ebbbeebeebeebbbbebebeebbe--bebbeebeebbbbebebebb----eeee----beebeebeebbbeebebeebeeebbeebeebebbbbbebeb:    
Contact         :           b    b                  b   b                               bb                    b  b   

queryA       599:NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG: 685
                :  **   *                              *       **  * *  * *   **               *****   *:
3zyj_A_1     268:TLLPHDLFT-------------------------PLHHLERIHLHHNPWNCNCD-ILWLSWWIKDMAPSNTACCAR--CNTPPNLKG: 326
SecStr          :    TTTTS-------------------------S TT  EEE  SS EE SST-THHHHHHHHTTS SS S   B--EEESTTTTT:    
ExpBur          :eebbbebbe-------------------------ebeebeebbbeebebebeeb-bbbbbeebeeebeeeeebebe--beeeeeeee:    
Contact         :                                        b b  b                        bb b b                        


Input Residue Numbers for Focused Sites

ex) 2,15,123