[pdbjlvh2]Protein Model on 3zyi_A_1_E

Protein Model on 3zyi_A_1_E_1 (TEMPLATE: 3zyi )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [395 aa]	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 :LRRC4_HUMAN
2	b		E 1 (A)	non-polymer(PO4)	PHOSPHATE ION	683Y(M) 686F(R) 695S (identity: 33.3 %/31.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3zyi_A_1 identity=31.8%

queryA       412:LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL: 511
                :***  * *  *  * *  * ***** ** * * *   *    **       *  *         *     *  * **        *    *     *  *:
3zyi_A_1      80:LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS--YAFNRVPSLMRL: 176
SecStr          :EE  SS   EE TTTTTT TT  EEE  SS   EE TTT-TTT TT  EEE  SS  SB  TTTSSS TT  EEE  S    EE T--TTTTT TT  EE:    
ExpBur          :bbbbebebeebeeeebbebeebebbebbbbbbeebeebb-beebeebebbbbeebebeebbeebbeebebbebbbbeebebeebee--ebbeebebbeeb:    

queryA       512:DLSN-NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV: 610
                :**        *     ***  *  * *   *                *  *  *  *    * * **    *  *  **                *    :
3zyi_A_1     177:DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN----------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA: 266
SecStr          :E    TT  EE TTTTTT TT  EEE TTS  SS   ---------- TT TT  EEE TTS  SEE GGGGTT TT  EEE TTS   EE TTTTTT T:    
ExpBur          :bbbebeebeeebebbbebbeebebbbbbebebeebbe----------bebbebbeebbbbebebeebebebbeebeebeebebbebebeebbbbbbeebe:    

queryA       611:SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAPF: 702
                :**  ***  *   *     * *  * * **    **  * *  * *   *  *             *  * *  *      *  *   ****:
3zyi_A_1     267:SLVELNLAHNNLSSLPHDLFTP-LRYLVELHLHHNPWNCDCD-ILWLAWWLREYIXXXSTCCGR--CHAPMHMRGRYLVEVDQASFQCSAPF: 354
SecStr          :T  EEE  SS  S   TTSSTT- TT  EEE  SS EE STT-THHHHHHHHHH ---  SS B--EEESTTTTT BTTS  GGG       :    
ExpBur          :ebebbbbbebebebbbbebbee-beebeebbbeebebebeee-bbbbbebbeeee---eebbbe--beeeeebeeeebeebeeeeeeeeebe:    
Contact         :                                                                        b  b        b

Protein Model on 3zyi_A_1_E_1 (TEMPLATE: 3zyi )

Input Residue Numbers for Focused Sites