Protein Model on 3wph_A_1_B_1
(TEMPLATE: 
3wph
)Protein Model on 3wph_A_1_B_1
(TEMPLATE: 3wph
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [725 aa] | Toll-like receptor 9 :TLR9_MOUSE | |
| 2 | b | B 1 (B) | polymer(polydeoxyribonucleotide) [12 base] | DNA (5'-D(*CP*CP*TP*GP*GP*AP*TP*GP*GP*GP*AP*A)-3') | 83G(K) 105N 108H(Y) 126T(R) 127E(V) 129H(F) 131M(D) 135I(Y) 136Q(Y) 137K 150I(T) 151T(H) 153D(S) 155S(K) 156H(Y) 177L 180N(Y) 201K(V) 203E(D) 209I(R) 220I(P) 221G(N) 252N(G) 254S(V) 256S(K) 278M(V) 282S 283Y(E) 302Y(K) 304F(N) 306E(S) 307Y(F) (identity: 12.5 %/29.1 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3wph_A_1 identity=29.1% |
queryA 34:VADCSHLKLTQVPD----DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK------------LEPELCQKLPMLKVLNLQHNELSQ----: 113
: ** * * ** *** * * * * * * * * * ** * *** * :
3wph_A_1 21:LVDCNWLFLKSVPRFXXXASCSNITRLSLISNRIHHLHNSDFVHLSNLRQLNLKWNCPPTGXXXXXXSCHMTIEPRTFLAMRTLEELNLSYNGITTVPRL: 120
SecStr :EEE TTS SS --- TT EEE TT EE TTTTGGGTT SEEE TTSB ------ EE TTTGGG TT EEE SB SS :
ExpBur :bbebbebebeebbee---eebeebeebbbbebebeebeeebbeebeebebbbbeebbebee------ebebeeeeebbeebeebeebebbebbbeebbeb:
Contact : b b b
queryA 114:----------------LSDKTFAFCTNLTELHLMSNSIQK------IKNNP--FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE: 189
: * * * * * * * * * * * * * ** * * ** * * * * *:
3wph_A_1 121:PSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSQLTHLSLKYNNL--TKVPRQLP-PSLEYLLVSYNLIVKLGPE: 217
SecStr : TT EEE TTS EE TTTTTT TT EEE SSBTTB SS EE TTTTTT TT EEE SS --SS SS -TT SEEE SS EE GG:
ExpBur :beebbebbbbbbebeebeeebbeebeebebbebbbbbbeebeeeeebebeeebbeebeebbebbbeebeb--eebbeebb-eebeebebbbbebeebbee:
Contact : bbb bb bb b b bbb bb b bb b b
queryA 190:ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--N: 287
: * ** * * * ** * * * * * * * * * ** * **** * * :
3wph_A_1 218:DLAQL--TSLRVLDVGGNCRR-----CDHAPNPCIECGQKSLHLHPETFHHL------SHLEGLVLKDSSLHTLNSSWFQGL--VQLSVLDLSENFLYES: 302
SecStr :GGTT --TT SEEE TTSSB ----- TT SS B SSSS EE TTTTTT ------SS EEE SS S GGGGTT --TT EEE TTSS HHH:
ExpBur :bbeeb--eebebbbbbbbbeb-----beeeeeeeeebeeeebebeeebbeeb------eebebbbbebbbbeebeeebbebb--eebeebbbbebebeeb:
Contact : b b b bb b b b b bb
queryA 288:VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH------GLFNVRYLNLK----RSFTKQSIS-LASLPKIDDFSFQW-------------LKCLEHLNME: 363
: * * * * * ** * ** * * ** *** * * :
3wph_A_1 303:ITHTNAFQNLTRLRKLNLSFNYXXXXXXARLHLASSFKNLVSLQELNMNGIFFRLLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFVDLS: 402
SecStr :HHH TTTT S EEE TT ------ GGGGG TT EEE TT SEE TTTSGGGTT TT EEE SS EE GGGGGSSSS EEE :
ExpBur :bbebebbeebeebeebebbebe------eebebbebbeebebbebbbbbbbebebbbeebbeebbebeebbbbbbbebebeebebbbbeebeebeebbbb:
Contact : b b bb
queryA 364:DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF------VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN: 457
:** * * * * * * * * * * * * * * * *:
3wph_A_1 403:DNRISGPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDRCKNFKFTMDLSRNNLVTIKPEMFVQLSRLQCLSLSHNSIAQAVNGSQFLPLTN: 502
SecStr :SS S ----------------------------------- TTTS EEE TTS SS GGGGTT TT EEE TTS B S TTTT TT:
ExpBur :ebebeeeee-----------------------------------eeebeeeebbbebbebebeebeeebbeebeebebbbbbebebebebebebbebbee:
queryA 458:IFEIYLSYNKYLQLTRNSFALVPSLQRLMLR----RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG: 553
: ** ** ** * ** * * * * * * * * * * ** * * * * :
3wph_A_1 503:LQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSXXXXXXGIGHQFSFVTHLSMLQSLSLAHNDIHTRVSSHLNS-NSVRFLDFSGNGMGRMWDEG--GL: 599
SecStr : EEE SS B TTTTTT TT EEE TT ------ S TTGGGGG TT EEE TT TT S B-SS EEE TTS HHHHHTTT--TT:
ExpBur :bbbbbbbebebebeeeebbebbeebebbbbbebe------eeeebbbbbeebeebebbbbbebeeeeebbeebeb-ebbeebbbbebbbbebbeee--ee:
queryA 554:PIYFLKGLSHLHILNLESNGFDEIPVEVFKD-------------------------LFELKIIDLGLNNL-----NTLP-------------------AS: 604
: * *** * * * * * * ** * * *** :
3wph_A_1 600:YLHFFQGLSGLLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFNWTSLSFLPNLEVLDLAGNQLKALTQGTLPNGTLLQKLDVSSNSIVSVVPA: 699
SecStr :TTTTTTTBTT EEE TTS S HHHHHTS TT SEEE TTS GGGGGG TT EEE TTS B SS TT EEE TTS B TT:
ExpBur :bbebbebbeebeebebbebebeebeeebbebbbeebeebbbeebebeebebebbeebeebeebbbbebebeebeeeebbeebebeebebbebebeebeee:
queryA 605:VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 696
: * * ** ** * * *** ** ** * ** * * * ** * * * * * * * * *:
3wph_A_1 700:FFALAVELKEVNLSHNILKTVDRSWFGPIVMQLTVLDVRSNPLHCACG--AAFVDLLLEVQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLC: 789
SecStr :TTTT TT EEE TTS S GGGTGGGGGT SEEE TT EE SS-- SHHHHHHHTGGGSTTHHHHSBEEESTTTBTSBTTSS STT :
ExpBur :bbeebeebeebebbebebeebeeebbeebbeebeebbbeebebebeee--bebbebbbebeeebebbbbebebeeeeebeeebbbeeebeee:
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[assembly_id:1]
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