[pdbjlvh2]Protein Model on 3wpe_A_1_B

Protein Model on 3wpe_A_1_B_2 (TEMPLATE: 3wpe )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [714 aa]	Toll-like receptor 9 :TLR9_BOVIN
2	b		B 2 (C)	polymer(polydeoxyribonucleotide) [6 base]	DNA (5'-D(CPAPTPGPAPCPGPTPTPCPCPT)-3')	519A(H) 543A 544R(F) (identity: 33.3 %/30.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3wpe_A_1 identity=30.6%

queryA       360:LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF: 459
                :*    *    *   *** *  *  * **    *        ** *    *  * *  **        *  *  ** ***  *       *    *    *:
3wpe_A_1     455:LDLSRNNLVTIQQEMFTRLSRLQCLRLSHNSIS-QAVNGSQFVPL--TSLRVLDLSHNKLDLYHGRSFTELPQLEALDLSYNSQPFSMQGV---GHNLSF: 548
SecStr          :EE  SS   S  GGGGTT TT  EEE  S    - B  S SSTT --TT  EEE  SS  B  STTTTTT TT  EEE  S HHHHT TT --- B  GG:    
ExpBur          :bbbbebebeebeeeebeebeebebbebbebebe-bebebebbeeb--eebebbbbbebebebeebebbebbeebebbebbebeebbeeeee---ebebeb:    

queryA       460:EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP--------------FQPLRNLTILDLSNNNIANINDDMLEGLEK-LEILDLQHNNLAR: 544
                :   *    ** *  *      *     *    *   * *                 *  ****  **** *         *  * * *  * *  **** :
3wpe_A_1     549:VAQLPSLRYLSLAHNG---IHSRVSQKLSSASLRALDFSGNSLSQMWAEGDLYLCFFKGLRNLVQLDLSENHLHTLLPRHLDNLPKSLRQLRLRDNNLAF: 645
SecStr          :GGG TT  EEE TTS ---  SSB S   BSS  EEE  SS HHHHTTSTTTTTTTTTTBTT  EEE  SS  S   HHHHHTS TT SEEE TT   S :    
ExpBur          :beebeebeebbbbebe---bbbebbeebebebbebbbbbbbbbeebbeeeeebbbbbebbeebeebbbbebebeebeeebbebbbebbeebebeebebee:    
Contact         :                                                                         b                        bb

queryA       545:L-WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR: 643
                :  *           *  *  *  * *  *               *   *   *         *     *  ***  *    *    **     *  **  :
3wpe_A_1     646:FNWSS---------LTVLPRLEALDLAGNQLKALSNGSLPPGIRLQKLDVSSNSIGFVIPGFFVRATRLIELNLSANALKTVDPSWFGXXAGTLKILDVS: 736
SecStr          :  SGG---------GGG TT  EEE TTS   EE SS S TT    EEE TTS   EE TTSSTT TT  EEE  SS  S   GGG  -- TT  EEE  :    
ExpBur          :bebeb---------beebeebebbbbbebebebbbeeebbeebebeebbbbebebeebeeebbeebeebeebbbbebebeebeeebbe--eeebeebebe:    

queryA       644:FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP: 680
                : **  *       **    *     *       *  *:
3wpe_A_1     737:ANPLHCA--XXXAFVDFLLERQEAVPXXXXXVTCGSP: 771
SecStr          :S  EE  ----- HHHHHHHTTTT  -----  EEE :    
ExpBur          :ebebeee-----ebeebbeebeebbe-----eeeeee:

Protein Model on 3wpe_A_1_B_2 (TEMPLATE: 3wpe )

Input Residue Numbers for Focused Sites