Protein Model on 3wpd_A_1_B_1
(TEMPLATE: 
3wpd
)Protein Model on 3wpd_A_1_B_1
(TEMPLATE: 3wpd
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [752 aa] | Toll-like receptor 9 :Q2EEY0_HORSE | |
| 2 | b | B 1 (C) | polymer(polydeoxyribonucleotide) [10 base] | DNA (5'-D(*CP*CP*TP*GP*GP*AP*TP*GP*GP*G)-3') | 57N(L) 60H(Y) 79S(V) 81D 96Q(R) 100M(H) 102K(R) 129H(V) 131M(K) 151T(V) 155S 156H(E) 201K(R) 203E(N) 205S 206S(F) 246A(D) 248T(H) (identity: 16.7 %/28.8 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3wpd_A_1 identity=28.8% |
queryA 42:LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK--VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK: 139
:** ** ** * * * * * **** * * * ** ** * * * * :
3wpd_A_1 190:LTTVPRSLPPSLEYLLLSYNHIVTLAPEDLANLTALRVLDVGGN---------CRRCDHARNPCVECPH-KFPQLHSDTFSHLSRLEGLVLKDSSLYQLN: 279
SecStr : SS SS TT SEEE SS EE GGGGTT TT SEEE TTS---------SB TT SS B T-T EE TTTTTT TT EEE SS S :
ExpBur :beebbeebbeebeebebbbbebeebbeebbeebeebeebbbbbb---------bebbeeeeeeeeebee-eeeebeeebbeebeebebbbbebbbbeebe:
Contact : b b b b b b bb b b
queryA 140:NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE: 239
: * ** **** * * * * * * * ** * * * * ** :
3wpd_A_1 280:PRWFRGLGNLTVLDLSENFLYDCITKTKA--------------FQGL----------AQLRRLNLSFNYHKKVS--------------FAHLTLAPSFGS: 341
SecStr :GGGSTT TT EEE TTSSTTTHHHH T--------------TTT ---------- S EEE TT BTTTB-------------- GGGGG:
ExpBur :eebbeebeebeebbbbebbbbebbeebeb--------------beeb----------eebeebebbebbbeeee--------------ebebebbebbee:
Contact : b bb b b bb
queryA 240:KLCL-ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI: 338
: * * ** * *** * * * * * * * * * * * * * :
3wpd_A_1 342:LLSLQELDMHGIFFRSLSQKTLQPLA-------RLPMLQRLYLQMNFINQAQLGIFKDFPGLRYIDLSDNRISGAVEXXXXXXXXXXXXXXXXXXXXXXX: 434
SecStr : TT EEE TTS SB TTTTGGGT-------T SS EEE SS B GGGGTT TT EEE SS SS -----------------------:
ExpBur :bebbeebbbbbbbbeebeeebbebbe-------ebeebeebbbbebebeebebebbeebeebebbbbbebebebeee-----------------------:
Contact : b b
queryA 339:SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL: 438
: ** * * ** * * * ** * ** * * * * ** * * ** ***:
3wpd_A_1 435:XXXXXXXXEDFMPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSIS-QAVNGSQFVPL--TSLQVLDLSHNKLDLYHGRSFTELPRLEALDL: 531
SecStr :-------- SS SSSSS EEE S SS SGGGTT TT SEEE SS - EESSSSSTT --TT EEE SB EE TTTTTT TT EEE :
ExpBur :--------eebbeebeebebbbbbbebebeebeeebbeebeebebbebbebebe-eebebebbeeb--eebbbbbbbebebbbbeeebbebbeebebbbb:
queryA 439:GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-----------FQPLRNLTILDLSNNNIANINDDMLE: 527
: * * * * * ** * * * * ** * * ** ** * **** * * :
3wpd_A_1 532:SYNSQPFSMRGV---GHNLSFVAQLPTLRYLSLAHNGIHSRVSQQLCSTSLWALDFSGNSLSQMWAEGDLYLRFFQGLRSLIRLDLSQNRLHTLLPCTLG: 628
SecStr : SB SSTT SS--- GGGTT TT EEE TTS SS S B SS EEE TTS HHHHHHSTTTSTTTTTB TT EEE TTS HHHHH:
ExpBur :bebeeeeebeee---ebebebbeebeebebbbbbebebeeebeeebebebbebbbbbbbbbeebbeeeeebbebbebbeebbbbbbbebebeebeeebbb:
queryA 528:GLEK-LEILDLQHNNLARL-WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV: 625
: * * * * * * ** * * * * * * * * * * * * *** * *:
3wpd_A_1 629:NLPKSLQLLRLRNNYLAFFNWSS---------LTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLDVSRNSIIFVVPGFFALATRLRELNLSANALRTV: 719
SecStr :TS TT EEE TT GGG---------GGG TT EEE SS EE SS TT EEE SS EE TTTTTT TT EEE SS S :
ExpBur :bbbeebebbebeebebeebebeb---------beebeebebbbbbbbebebbbeeebbeebebeebbbbebebeebeeebbeebeebeebebbebebeeb:
queryA 626:EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 696
:* ** * ** ** * * * ** * * * * * * * *:
3wpd_A_1 720:EPSWFGFLAGSLEVLDVSANPLHCACG--AAFVDFLLQVQAAVPGLPSRVKCGSPGQLQGRSIFAQDLRLC: 788
SecStr : GGGS S TT SEEE SS EE TT-- THHHHHHTTGGG TTTTTTSBEEESGGGTTSBTTSTTTTT :
ExpBur :eeebbeeebeebeebebbebebebeee--eebbebbbebeebbebbbbebebbbeeebeeebbbeeebeee:
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[assembly_id:1]
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