Protein Model on 3wpc_B_1_W_1 (TEMPLATE: 3wpc )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TLR3_HUMAN) B 1 (B) polymer(polypeptide(L)) [749 aa] Toll-like receptor 9 :Q2EEY0_HORSE
2 b W 1 (B) non-polymer(GOL) GLYCEROL 606F 607N(A) 609Q(A) 610V(T) 612L 613K(R) 630F 633A(L) 636N(S) 637L (identity: 40.0 %/29.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3wpc_B_1 identity=29.0%
queryA        42:LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK--VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK: 139
                :** **  **     * *  *    *          *  **** *         *              *    **   **     *  * *   *     :
3wpc_B_1     190:LTTVPRSLPPSLEYLLLSYNHIVTLAPEDLANLTALRVLDVGGN---------CRRCDHARNPCVECPH-KFPQLHSDTFSHLSRLEGLVLKDSSLYQLN: 279
SecStr          : SS  SS  TT SEEE TTS   EE GGGGTT TT SEEE TTS---------S  GGG SS      T-T  EE TTTTTT TT  EEE  SS  S   :    
ExpBur          :beebbeebbeebebbbbbbbebbebbbebbeebeebeebbbbbb---------bbbbeeeeeeeeebee-ebeeeeeebbeebeebebbbbebbbbeebe:    

queryA       140:NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE: 239
                :   *    **  **** * *      *                 * *            *  * ** *  *  *                   * **   :
3wpc_B_1     280:PRWFRGLGNLTVLDLSENFLYDCITKTKA--------------FQGL----------AQLRRLNLSFNYHKKVS--------------FAHLTLAPSFGS: 341
SecStr          :THHHHT TT  EEE TTSS TTGGGT  T--------------TTT ----------TT  EEE TT   SS  --------------BS     GGGGG:    
ExpBur          :eebbeebeebeebbbbbbbbbebbeebeb--------------beeb----------eebeebebbbbbeeeee--------------beebebbebbeb:    

queryA       240:KLCL-ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI: 338
                : * * **    *   ***   *               *  * *  *  *      *   * * *  *  * *                            :
3wpc_B_1     342:LLSLQELDMHGIFFRSLSQKTLQPLA-------RLPMLQRLYLQMNFINQAQLGIFKDFPGLRYIDLSDNRISGAVEXXXXXXXXXXXXXXXXXXXXXXX: 434
SecStr          : TT  EEE TTS BSEE HHHHGGGT-------T TT  EEE  SS   EE GGGGTT SS  EEE  SS   SS  -----------------------:    
ExpBur          :beebeebbbbbbbbeebeeebbebbb-------ebeebeebbbbebebeebebbbbeebeebebbbbbebebebeee-----------------------:    

queryA       339:SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL: 438
                :         **          *    *        **  *  *  * **    *        ** *    *  * *  **        *  *  ** ***:
3wpc_B_1     435:XXXXXXXSEDFMPSCKNLSFTLDLSRNNLVTVQPEMFAQLSRLQCLRLSHNSIS-QAVNGSQFVPL--TSLQVLDLSHNKLDLYHGRSFTELPRLEALDL: 531
SecStr          :------- TTTS  STTSS EEE  SS  SS  GGGGTT TT SEEE TTS   -    S SSTT --TT  EEE  SS      TTTTTT TT  EEE :    
ExpBur          :-------eeebbebbeebebbbbbbebebeebeeebbeebeebebbebbebebe-bebebebbeeb--eebbbbbbbebebebeeeebbebbeebebbbb:    

queryA       439:GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-----------FQPLRNLTILDLSNNNIANINDDMLE: 527
                :  *       *    *    *   *    ** *  *      * *       **     * *            ** ** *  **** *         * :
3wpc_B_1     532:SYNSQPFSMRGV---GHNLSFVAQLPTLRYLSLAHNGIHSRVSQQLCSTSLWALDFSGNSLSQMWAEGDLYLRFFQGLRSLIRLDLSQNRLHTLLPCTLG: 628
SecStr          : S HHHHTSTT ---    GGGGG TT  EEE TTS   SSS S  EESS  EEE  SS HHHHHTSTTTTTTTTTEETT  EEE  SS  S   HHHHT:    
ExpBur          :bebeebbeeeee---ebebebbeebeebebbbbbebebbeebbeebebebbebbbbbbbbbeebbeeeeebeebbbbbeebbbbbbbebebeeeeeebbe:    

queryA       528:GLEK-LEILDLQHNNLARL-WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV: 625
                : * * *  * *  * **   *           *  *  *  * *  *               *   *   *         *     *  ***  *    *:
3wpc_B_1     629:NLPKSLQLLRLRNNYLAFFNWSS---------LTLLPNLETLDLAGNQLKALSNGSLPSGTQLQRLDVSRNSIIFVVPGFFALATRLRELNLSANALRTV: 719
SecStr          :TS TT  EEE TTS  S   GGG---------GGGSTT  EEE TTS   EE SS S TT    EEE TTS   EE TTTTTT TT  EEE  SS  S  :    
ExpBur          :bbbeebebbebeebebeebebeb---------beebeebebbbbbbbebebbeeeebbeebebeebebbebebeebeeebbeebeebeebebbebebeeb:    
Contact         :                                                                                bb bb bb            

queryA       626:EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG: 685
                :*   **     *  **   **  * *   * **          * * *   *  *    *:
3wpc_B_1     720:EPSWFGFLAGSLEVLDVSANPLHCACG--AAFVDFLLQVQAAVPGLPSRVKCGSPGQLQG: 777
SecStr          : GGGGTT  TT SEEE  S  EE  TT-- HHHHHHHHTGGGSTTHHHH BEEESGGGBT:    
ExpBur          :ebebbeeebeebeebbbbebebebeee--bebbebbbebeebbebbbbebebbbeeeeee:    
Contact         :    b  b  bb                                                                                        


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