Protein Model on 3w3l_A_1_JA_1 (TEMPLATE: 3w3l )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [751 aa] Toll-like receptor 8 :TLR8_HUMAN
2 b JA 1 (D) non-polymer(RX8) 1-[4-amino-2-(ethoxymethyl)-1H-imidazo[4,5-c]quinolin-1-yl]-2-methylpropan-2-ol 307Y(F) 309N(Y) 310I 332S(G) 334T(V) 366D(F) 390F(R) (identity: 14.3 %/31.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3w3l_A_1 identity=31.4%
queryA        34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119
                : * **   *  **       * * *  *         *     **      *                          *  *  * *  * * *      :
3w3l_A_1      24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120
SecStr          :EEE TTS  SS  TTS TT SEEE TTS   EE TTSSTT SS  EEE  S S  ------------  EE TTTTTT SS  EEE TTS  SS  S---:    
ExpBur          :bbebeebebeebbeebbeebbebbbbebebeebeeebbeebeebeebbbbebbee------------ebebeebbbeebeebeebbbbebebeebbe---:    

queryA       120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190
                :     **** *  * *  *         **  * *  *     *       *                              *  * ***  *     * :
3w3l_A_1     121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219
SecStr          :S  TT SEEE  SS   EE TTTTTT TT SEEE  SSS TT-      EE TTTTTT TT  EEE  SS  SS  SS  TT SEEE TTS   EE SST:    
ExpBur          :bbbeebbbbbbbbbebeebbeebbbebeebeebbbbbbbbee-eeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeee:    

queryA       191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288
                :     *  *  * ** *      * ** *              * *           *  * * **   *       *       *  ***  * *    :
3w3l_A_1     220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305
SecStr          :TTT TT  E--EE TTS-----S   TT SS    ----- GGG   EE TTTTTT TT  EEE TTS  S   GGGGTT T--T  EEE TTS  HHHH:    
ExpBur          :beebeebeb--bbbbbb-----bbbbeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeeebbeebe--ebebbbbbebebbebb:    

queryA       289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381
                :        ** **   *  * *     **   *     *   * * * *    *          ***     *  *   *   * *  *    *    **:
3w3l_A_1     306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398
SecStr          :HH GGGGG TT  EEE  S   TT   SB    GGGGG TT  EEE - S   SEE------ GGGGGGGTT TT  EEE  SS   EE GGGGGSSSS :    
ExpBur          :eebebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbb-bbbbbbeb------eeebbebbbebeebebbbbbebebeebebebbeebeeb:    
Contact         :                  b bb  bb                       b b                                b               

queryA       382:KYLSLSNSFTS-------------------LRTLTNETFVSLAHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446
                :    **    *                           *    **       **           * *  * *  *    *  *     * *  *   * :
3w3l_A_1     399:EIIYLSENRISPLXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 498
SecStr          : EEE  SS     -------------------------  S TTS SSS  S SS HHHHTTSEEEE  SS   S  TTTTTT   EEEEE TTS     :    
ExpBur          :eebbbbebebeee-------------------------eeeebeeebbeeeeebbeeebeeeeebbbbbebebeebeeebbeebbebbbbbbbebebebe:    
Contact         :        b                                                                                           

queryA       447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533
                :* * *               *** ** *   *     *  *    *              *       *   **  * ** ***    *   **     *:
3w3l_A_1     499:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 590
SecStr          :  S TTTTSTT -------- EEE  SS      TTTTTT TT  EEE  S HHHHT TTS    GGGGG SS  EEE TTS     SS     BSS  E:    
ExpBur          :bebebbeebeeb--------ebbbbbebebbbeeeebbebbeebbbbbbbebbeebeeeeeebbbbbbeebeebeebebbebbbebbbeeeebebebbee:    

queryA       534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592
                :      * *  **        *   ***  *  * *  *    ** * *      * ** * *                                     :
3w3l_A_1     591:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 688
SecStr          :EE- TTS HHHHT- TT  TTTTTTTTBTT  EEE TTS  S   HHHHHTS TT SEEE  SS  S   GGGGGG TT  EEE  SS      S HHHH:    
ExpBur          :bb-bbbbbbeebb-eeeeeebbebbeebeebeebbbbebebeebbeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebbeb:    

queryA       593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPH: 682
                :        *  *    **        *** * *  **     *          *  *    *** ***  *  *  *  *     ** *     *  *  :
3w3l_A_1     689:TSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGD: 786
SecStr          : SS  EEE  SS      TT SSS  S  EEE  SS      GGGS  SS     EEE TT  EE SGG-GHHHHHHHHH  SSB S GGG- BEEESTT:    
ExpBur          :bebbebbbbbebebeebbeebbeebebbeebbbbebebebbeeebbeeeeeeebeebbbbebebebeee-beebeebbeeeeebebeebbb-bebeeeee:    

queryA       683:YHG: 685
                :  *:
3w3l_A_1     787:QRG: 789
SecStr          :STT:    
ExpBur          :eee:

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