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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [746 aa] | Toll-like receptor 8 :TLR8_HUMAN | |
2 | b | GA 1 (B) | non-polymer(SO4) | SULFATE ION | 613K 636N(K) (identity: 50.0 %/31.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3w3j_B_1 identity=31.4% |
queryA 34:VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELSQLSDKTF: 119 : * ** * ** * * * * * ** * * * * * * * * : 3w3j_B_1 24:IAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXXGLNITDGAFLNLKNLRELLLEDNQLPQIPS---: 120 SecStr :EEE TTS SS S TT EEE TTS EE TTTTTT TT EEE TTSS ------------ EE TTTTTT TT EEE TTS SS S---: ExpBur :bbebbebebeebbeebeeebbebbbbebebeebeeebbeebeebbebbbbebbee------------ebebeebbbeebeebeebbbbebebeebbe---: queryA 120:AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-----------------------------LQELLLSNNKIQALKSEE: 190 : **** * * * * ** * * * * * * * *** * * : 3w3j_B_1 121:GLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFN-KVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEED: 219 SecStr :S TT SEEE SS EE TTTTTT TT SEEE SSS TT- EE TTTTTT TT EEE SS SS SS TT SEEE TTS EE TTT: ExpBur :ebbeebbbbbbbbbebbebeeebbbebeebeebebbbbbbee-eeeeebeeeebbbeebeebebbbbbbbbbeebbeebbebbeebebbbbebeebbeee: queryA 191:LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL--NV: 288 : * * * ** * * ** * * * * * * ** * * * *** * * : 3w3j_B_1 220:FKGLINLTL--LDLSGN-----CPRCFNAPFPCVP-----CDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMP--HLKVLDLEFNYLVGEI: 305 SecStr :TTT TT E--EE TTS-----S TT SS ----- GGG EE TTTTTT TT EEE TTS S GGGGTT T--T EEE TTS HHHH: ExpBur :beebeebbb--bbbbbb-----bbbbeeeebeeee-----beeeeebebeeebbeebeebeebbbbbbbbeebeebbbeebe--ebebbbbbebebbebb: queryA 289:VGNDSFAWLPQLEYFFLEYNNI-----QHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS-FQWLKCLEHLNMEDNDIPGIKSNMFTGLINL: 381 : ** ** * * * ** * * * * * * * *** * * * * * * * **: 3w3j_B_1 306:ASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHL-RGYVFQEL------REDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNL: 398 SecStr :HS GGGGG TT EEE S TT SS GGGGG TT EEE -TT SEE------ TGGGGGGTT TT EEE SS EE GGGGGGSSS : ExpBur :eebebbeebeebeebbbbbbbeeeeeeeebebbeebeebeebebbbb-ebbbbeeb------eeebbebbbebeebebbbbbebebeebebebbeebeeb: queryA 382:KYLSLSNSFTS-------------------LRTLTNETFVSLAHS-------PL---------HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE: 446 : ** * * ** ** * * * * * * * * * * * : 3w3j_B_1 399:EIIYLSENRISPXXXXXXXXXXXXXXXXXXXXXXXXXXFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQV: 498 SecStr : EEE SS -------------------------- S TTS SSS S SS HHHHTTSEEEE SS TTTTTT EEEEE TTS : ExpBur :ebbbbbebebee--------------------------eebebeeebbeeeeebbeeebeeeeebbbbbebebeebeeebbeebbebbbbbbbbbebebe: queryA 447:LTGQEWRGLENIFEIYLSYNKYLQLTRN--SFALVPSLQRLMLRRV----------ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLE: 533 :* * * *** ** * * * * * * * ** * ** *** * ** *: 3w3j_B_1 499:LSGTEFSAIPHV--------KYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVE: 590 SecStr : S TTTTSTT --------SEEE SS TTTTTT TT EEE S HHHHT TTS GGGGG SS EEE TT SS EESS E: ExpBur :bebebbeebeeb--------ebbbbbebebbbeeeebbebbeebbbbbbbebeeebeeeeeebbbbbbeebeebeebbbbebebebbbeeeebebebbee: queryA 534:ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF----KDLFELKIID-------------------------------------: 592 : * * ** * *** * * * * ** * * * ** * * : 3w3j_B_1 591:LV-FSGNRLDILW-NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDF: 688 SecStr :EE- TTS HHHHT- TT TTTTTTTEETT EEE SS S HHHHHTS TT SEEE SS GGGGGG TT EEE SS S GGGT: ExpBur :bb-bbbbbbeebb-eeeeeebbebbebbeebeebbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebeeb: queryA 593:--------LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF-GPAFRNLTELDMRFNPFDCTCESIAWFVNWINE-THTNIPELSSHYLCNTPPH: 682 : * * ** *** * * ** * * * *** *** * * * * ** * * * : 3w3j_B_1 689:TSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCD-IGDFRRWMDEHLNVKIPRLVD-VICASPGD: 786 SecStr : SS EEE SS TTHHHH SS SEEE TTS S SGGG S EEE TT EE SGG-GHHHHHHHHT TTSB SSGGG- BEEESTT: ExpBur :beebebbbbbebebeebbeebbeebebbebbbbbebebebbeeebbeeeeeeebeebbbbebebebeee-bbebeebbeeeeebebbebbb-bebeeeee: Contact : b b b queryA 683:YHG: 685 : *: 3w3j_B_1 787:QRG: 789 SecStr :TTT: ExpBur :eee: |