Protein Model on 3vq1_A_1_C_1 (TEMPLATE: 3vq1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [596 aa] Toll-like receptor 4 :TLR4_MOUSE
2 b C 1 (B) polymer(polypeptide(L)) [596 aa] Toll-like receptor 4 :TLR4_MOUSE 366D(S) 390F(A) 392S 394R(S) 418K(G) 442E(T) 444G(K) 467K(N) 517N(Q) 519A(E) 597N(R) (identity: 9.1 %/27.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3vq1_A_1 identity=27.9%
queryA        37:CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ: 136
                :*   **  **** *       *  * *  *    *   * *  **     *   *      *  *  * *  *     *   *   * *  *        :
3vq1_A_1      18:CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA: 117
SecStr          : TTS  SS  TTS TT SEEE  SS   EE TTTTSS  S  EEE TT    EE TTTTTT SS  EEE TT       TTTTTT TT  EEE TTS   :    
ExpBur          :beeeebeebbeebeeebeebbbbebebeebebeebeebeebeebbbbebebeebeeebbebbeebbebbbebbebeebeeebbeebeebebbbbbebebe:    

queryA       137:KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLK--KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL: 233
                :     *      *  *   **   * **      * **    ** * **      *            *  * * *       *  *  *  * *     :
3vq1_A_1     118:SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRG-NF: 215
SecStr          : STT S TT TT  EEE  SS        GGGGT TT  EEE  SS   EE TTTTHHHHH TT   EEE TT    EE TTTTTT -EEEEEEEES-  :    
ExpBur          :ebeebebeebeebeebebbebebeebebbebbeebeebeebbbbebebeebeeebbebbeeeeeeebbbbbbebebeebeeebbeeb-ebebbbbeb-bb:    

queryA       234:GPSLTEKLCLE-LANTSIRNLSLS----NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL-: 327
                :  *   * **  **      * *        *         **         * * *                               ** *     ** :
3vq1_A_1     216:NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN-------------DFSDDIVKFHCLANVSAMSLAGV-SIKYLE: 301
SecStr          :SSHHHHHHHHGGGTT EEEEEEEE BTTB   S   GGGGGGGGSSEEEEEEE   S-------------S  GGGTT GGGTT SEEEEES -      :    
ExpBur          :eebeebeebbeebbebebebbbbbbeeeeeebeebebebbebbeebebeebebbbbe-------------ebbeebbebebbbebebbbbebb-bbeebe:    

queryA       328:NLKRSFTKQSISL--ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD: 425
                :     *  ** *     *          ** *  * *    *   *      *  * ** **    *           *    *  * *  *    * * :
3vq1_A_1     302:DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT-LTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCC--SYSDLGTNSLRHLDLSFNG-AIIMSA: 393
SecStr          :   TT   SEEEEES   SS      SS  EEE-EES SS  B   ----   TT  EEE  SS  BEEEE -- HHHHT S   EEE  S S-EEEE S:    
ExpBur          :ebeeebebeebebeebebeebbebebeebeebb-bbebeeebebee----bebeebeebbbbebebebeebb--beebbbbeebebbbbbebe-ebebeb:    
Contact         :                                        b                       b b b                       b       

queryA       426:AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM: 525
                : *  *  *  **                 **       **          *    **  *       *        *    *** ****      *    :
3vq1_A_1     394:NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD-NTLSNVFANTTNLTFLDLSKCQLEQISWGV: 492
SecStr          :  TT TT  EEE TTSEEESTTTTTTTTT TT  EEE TTS  EE  TTTTTT TT  EEE TT EEGG-GEE S  SS TT  EEE TTS   EE TTT:    
ExpBur          :ebebbeebeebbbeebebeebeeebbbebbeebebbbbbebebebeeebbbebbeebebbebbebbbee-ebbbebbeebeebbebbbbebebeebeeeb:    
Contact         :                b b                      b                                                 b b      

queryA       526:LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV: 625
                :   *  *  *   ****                        * * *             *  *   *   *   *                  *      :
3vq1_A_1     493:FDTLHRLQLLNMSHNNL------------------------LFLDSSHYNQ--------LYSLSTLDCSFNRIET-----------------SKGILQHF: 543
SecStr          :TTT TT  EEE  SS  ------------------------S EEGGGTTT-------- TT  EEE TTS    -----------------EES GGGS:    
ExpBur          :beebeebeebebbebeb------------------------eebbbebbee--------beebeebebbebebeb-----------------beeebeeb:    
Contact         :                                                                       b                            

queryA       626:EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETH---TNIPELSSHYLCNTPPHYHGFPVRLFDTSSC: 696
                : *     ** ***      *   * **    *  *  *      *         * **       *  *  * *:
3vq1_A_1     544:PKSL---AFFNLTN-----NSVACICEH-QKFLQWVKEQKQFLVNVEQMT----CATPXXXNTSLVLDFNNSTC: 604
SecStr          : TT --- EEE  S-----S    SGGG-HHHHHHHHHT TTEETGGG  ----    ---   STT    S  :    
ExpBur          :beeb---eebbbbe-----bebbbeeee-eebbebbeeeeeebeebeebe----beee---eeebeeeeeeeee:

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