Protein Model on 3rg1_A_1_R_1
(TEMPLATE: 
3rg1
)Protein Model on 3rg1_A_1_R_1
(TEMPLATE: 3rg1
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(TLR3_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [594 aa] | CD180 molecule :A6QNK7_BOVIN | |
| 2 | b | R 1 (R) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 416K 417N(G) 439G(S) 440L(H) 460E(Y) 462Y(N) 464S 465Y 486M(D) (identity: 33.3 %/29.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:3rg1_A_1 identity=29.7% |
queryA 27:KCTV--SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN: 124
:*** * * * ** ** ** * * * * * ** * * * * * * :
3rg1_A_1 6:KCTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKF: 105
SecStr : EEEETTTEEE TTS SS TTS TT EEE S SEE TTTTSS TT SEEE TTS EE TTTTTT TT EEE TT EE TTTT S :
ExpBur :ebeeeeeebbbebeeeebeebeeebeeebeebebbebebeebeeebbeebeebeebbbbebebeebeeebbeebeebebbbbebbebeebbeebbbebee:
queryA 125:LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF: 224
:* * * * * ** * * * ** * ** * ** * * * ** ** * * *:
3rg1_A_1 106:LKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGIEPGAF--ISKIF: 203
SecStr : EEE TTS GGGS TT TT SEEE TTSS TT TT EEE SS EE HHHHHTTTT SSEEEE TT EE TTTT-- STTE:
ExpBur :beebebeebebeebeebbeebbeebebbbbbebebeebebbeebebeebeebbbeebebeebbeebbeebeebeebebbbbebebebbeebbb--ebebb:
queryA 225:GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL--F: 322
: * ** ** * ** * * ** * * * * ** :
3rg1_A_1 204:----QSLKFGGSL--------------NLFI-----------IFKGLQNSTLQSL----------------WLGTFED-----TDDQYLTSATFEGLCDM: 253
SecStr :----EEEE TT S-------------- HHH-----------HHHHTTT EEEEE----------------E SS-----S B GGGGGGGGGS:
ExpBur :----ebbebbbbe--------------ebee-----------bbebbeebebeeb----------------ebbbeee-----eeeeebeeebbebbeeb:
queryA 323:NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC---LEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNK: 418
: * ** * * * * * * * ** * * *** * * ** * * * :
3rg1_A_1 254:SVESINLQKH------------RFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGI-EGMNSLKKLVLNANSFDQLCQINAASFPSL--RDLYI----KGN: 334
SecStr :EEEEEE TT ------------ BTT GGGGTT TT SEEE TT S S -STTTT EEE TT SBGGGG GGG TT -- EEE ---- S :
ExpBur :ebeebbbeeb------------ebeeeeeebbebbeebeebebbbbebeebbeeb-ebbeebeebbbbebbbeebeebebebbeeb--ebbbb----eeb:
Contact : bb
queryA 419:ISKIE--SDAFSWLGHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN: 515
: * * * *** * * **** * * * * * * * * **** * * * ** :
3rg1_A_1 335:MRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHL-HVKAPHSPFQNLHLLRVLNLSH: 433
SecStr :SS BB SSTTTT TT EEE TTS B SSBSTTTTTT TT EEE S S EEB TTTTTTSTT EEE TTS E-E TT TTTT TT EEE TT:
ExpBur :eeebebbebbbbebbebeebbbbebebebeebbbebbeebeebeebbbbebebbbbeeebbbebebbeebebbebeb-ebeeeebbbebbeebeebebbe:
Contact : bb b b bb b
queryA 516:NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY---FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL: 612
: * * ** * * ** * * * * * ** * * * * * ** * * *:
3rg1_A_1 434:CLLDTSNQHLLAGLQDLRHLNLQGNSFQ--------DGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL: 525
SecStr : TT TTTTTT TT EEE TT G--------GGEE SS TTTTSTT SEEE TTS SEE TTSSTT EEE SS GGGGGGGTT S :
ExpBur :bebebebeebbbbbeebbebbbeebebe--------ebebebebbbeebeebeebbbbebebeebeebbbeebeebeebbbbebebebebbebbeebeeb:
queryA 613:KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG: 685
: ** * * ** ** **** * * * * * * * ** *:
3rg1_A_1 526:Y-LNMASNNIRIIPPHLL-PALSQQSIINLSHNPLDCTCSNI-HFITWYKENLHKL-EDSEETTCANPPSLRG: 594
SecStr :E-EE SS GGGH-HHHHTSSEEE SS EE SGGGH-HHHHHHHHTGGGB-TTGGG BEEESGGGTT:
ExpBur :e-bbbbebebeebbeebb-ebeeebeebbbbebebbeeeebe-ebeebeeeeeebe-beeebbebeeeeebee:
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[assembly_id:1]
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