[pdbjlvh2]Protein Model on 3o6n_A_1_B

Protein Model on 3o6n_A_1_B_1 (TEMPLATE: 3o6n )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [378 aa]	APL1
2	b		B 1 (B)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	153D(Q) 155S 180N 182K(S) 203E(D) (identity: 40.0 %/31.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:3o6n_A_1 identity=31.3%

queryA        53:ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL: 152
                :   ***   *        *        *  *** *  * *   *  * * ** *  * ** *    *     ** *    *    *    *     *  *:
3o6n_A_1      71:VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL: 170
SecStr          : SEEE TTS   EE TTTTTT TT  EEE  SS      TTTTTT TT  EEE  SS      TTTTTT TT  EEE  SS   B  TTTTSS TT  EE:    
ExpBur          :beebebeebebeebeeebbeebeebeebebbebebeebbeebbeebeebebbbbeebebeebeeebbeebeebeebbbbebebeebeebbbeebeebeeb:    

queryA       153:DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN: 252
                : ** * *      * * *     *   *     *      *        *  * * *                    **  **   *   * *       :
3o6n_A_1     171:QLSSNRL------THVDLSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSI--------------------NVVRGPVNVELTILKLQHNNL--: 238
SecStr          :E  SS  ------SB  GGG TT SEEE  SS  SEEE  S----S SEEE  SS  -------------------- EEE    SS  EEE  SS  --:    
ExpBur          :ebbebeb------eebebeebeebeebebbebebeebbbbe----ebeebebbebeb--------------------eebeeeebeebbbbebbebeb--:    
Contact         :b b                        b b                    b                                                 

queryA       253:LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI: 310
                :             *  * *    *   ***** *       *     **      *  :
3o6n_A_1     239:-----------TDTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL: 284
SecStr          :-----------   GGG-GG TT SEEE  SS   EEESGGGTT SS  EEE  SS  :    
ExpBur          :-----------eebebb-eebbbbbbbbbbebebeebeeebbeebeebeebebbebeb:

Protein Model on 3o6n_A_1_B_1 (TEMPLATE: 3o6n )

Input Residue Numbers for Focused Sites