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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR3_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [632 aa] | Toll-like receptor 5 :TLR5_HUMAN | |
2 | b | K 1 (K) | branched(oligosaccharide) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | 49L 50P(N) 73R(F) 75S(E) (identity: 25.0 %/30.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3j0a_B_1 identity=30.9% |
queryA 27:KCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL: 125 : * * ***** * * * * * * * * ** * * * * ** * * * * * *: 3j0a_B_1 1:SCSFDGRIAFYRFCNLTQVPQVLNTTERLL-LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL: 99 SecStr : SSSSEEEEES SS TTS TT EEE-EES EE SSS SS S SEEEE TT EE SSTTSS TT EEE TT B TTSS S SS : ExpBur :eeeeebebebeeeeeeeebeebeeebeebe-bbebebeebebebbeebeebeebebbbebebeebeeebbeebeebebbbbbebebeeeeeebbebbeeb: Contact : bb b b queryA 126:TELHL----MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG: 221 : ** * * * * * * **** * * * * *** ***** * * : 3j0a_B_1 100:FELRLYFCGLSDAV--LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-------------------------SLKSIDFSSNQIFLV---CEHELE: 169 SecStr : EE TT SS --STT SS SS EEEEES GGGGT S-------------------------S EEEEESS --- SGGGH: ExpBur :eebebeebebeebe--beeebbeebebbbebbbbebebebbebbebbeebe-------------------------ebeebebbebebeeb---eeebbe: queryA 222:RLFGLFLNNVQLGP-SLTEKLCLELANT--SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF---LEYNNIQHLFS: 315 : * * * * ** ** * * * ** * * * * ** : 3j0a_B_1 170:PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS--------GNGWT----VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ: 257 SecStr :HHHH SS EE SBS SSS TTTT BSEEB S--------S SS----HHHHTTGGGTS S BSEEE S B SSS SSSTTTTT: ExpBur :ebeeeeeeebbbbbbbebebeebeeeeeebbbeebebeebebb--------bbeee----beebbebbebbbebebebbbebeebebbbebebeeeeebe: queryA 316:HSLHGLF--NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN: 413 : ** ** * * * * ** * ** * * * * ** ** * * * * * * * : 3j0a_B_1 258:NTFAGLARSSVRHLDLSHGFVF---------SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL--SYNLLGELYSSNFYGLPK--VAYID: 344 SecStr :TTHHHHTTS EEE TT ---------BB S SSS EEE S B TTTTTT SS EEE -- S S S S SS TT-- EEE: ExpBur :ebbebbeebebeebbbbebebe---------ebeeebbeebeebebbbbbebebeebeeebbeebeebeebeb--bebbeeeeeebbbeebee--bbebb: queryA 414:LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL: 513 :* ** * * * * * *** * * * ** ** * * * * * * * * * ** *: 3j0a_B_1 345:LQKNHIAIIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKLVTLPK--INLTANLIHLSENR--LENLDILYFLLR-VPHLQILIL: 433 SecStr : S SSSS S EEEEET S------ SS SEEEEES -- TT EEE S -- SSHHHHHHTT- TT EEE : ExpBur :beebebeebeeebbbebeebebbbbeebbe------bbbeebbebeebebbebeebeebe--eeeebeebbbeebe--beeebbbebbee-beebeebbb: queryA 514:SNNNIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-----NTLPASVFN: 607 : * * ** * * * * * ***** * * * * ** * * * * * * *** : 3j0a_B_1 434:NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD---VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA----: 526 SecStr :SS SSSSS S TT EEE S SSS S SS--- SS B EE HHHHTT TTSTTT S EEEEES SS S----: ExpBur :eebebeebbeeebbbebeebeebebbebebeebbeeebbeb---beebbbbbebbebeeeebeebeeebbeebeebebbbbbebebeebebeeebe----: queryA 608:NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC-----KDSAPF: 702 : * * * * * * ** * * * ** * ** * * * * * * * * *: 3j0a_B_1 527:---NLEILDISRNQLLAPNPDV----FVSLSVLDITHNKFICECE-LSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCXXXXXXXXXXF: 618 SecStr :--- EEEEEEE S ---- SS EEEEEEE SSS- HHHHHHHHTTGGG GGG S SSS S TTT ---------- : ExpBur :---ebeebebbebebbbeeeee----beebeebbbbebebbbeee-eeebeebbeebeeeeebeeeebebeebeeeeeeebeeeeeeee----------e: queryA 703:ELFFMINTSILLIFIFIVLLIHFE: 726 : ** * * * : 3j0a_B_1 619:SLFIVCTVTLTLFLMTILTVTKFR: 642 SecStr :HHHHHHHHHHHTTTHHHHHHSS : ExpBur :eeeeeeeeeeeeeeeeeeeeeeee: |