Protein Model on 3j0a_B_1_A_1 (TEMPLATE: 3j0a )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(TLR3_HUMAN) B 1 (B) polymer(polypeptide(L)) [632 aa] Toll-like receptor 5 :TLR5_HUMAN
2 b A 1 (A) polymer(polypeptide(L)) [797 aa] Toll-like receptor 5 :TLR5_HUMAN 38S(R) 40L(C) 62Q(Y) 85N(Q) 273W 704L 707M(V) 711S(T) (identity: 25.0 %/30.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3j0a_B_1 identity=30.9%
queryA        27:KCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL: 125
                : *      *      *****  * *    * *  *  *   *  *    **  *  *   *      *    ** *  * *       *    *     *:
3j0a_B_1       1:SCSFDGRIAFYRFCNLTQVPQVLNTTERLL-LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL:  99
SecStr          :  SSSSEEEEES   SS  TTS TT  EEE-EES    EE SSS SS  S SEEEE TT    EE SSTTSS TT  EEE TT    B  TTSS S SS :    
ExpBur          :eeeeebebebeeeeeeeebeebeeebeebe-bbebebeebebebbeebeebeebebbbebebeebeeebbeebeebebbbbbebebeeeeeebbebbeeb:    
Contact         :           b b                     b                      b                                         

queryA       126:TELHL----MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG: 221
                : ** *     *      *   *   * *  **** *   *  *       *                         ***    *****      * *   :
3j0a_B_1     100:FELRLYFCGLSDAV--LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-------------------------SLKSIDFSSNQIFLV---CEHELE: 169
SecStr          :  EE TT   SS  --STT   SS SS  EEEEES         GGGGT S-------------------------S  EEEEESS     --- SGGGH:    
ExpBur          :eebebeebebeebe--beeebbeebebbbebbbbebebebbebbebbeebe-------------------------ebeebebbebebeeb---eeebbe:    

queryA       222:RLFGLFLNNVQLGP-SLTEKLCLELANT--SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF---LEYNNIQHLFS: 315
                : * *  *    *   **               **  *     *        *  **     *   *  *         *              **     :
3j0a_B_1     170:PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS--------GNGWT----VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ: 257
SecStr          :HHHH SS   EE  SBS         SSS TTTT  BSEEB S--------S  SS----HHHHTTGGGTS S  BSEEE  S   B SSS SSSTTTTT:    
ExpBur          :ebeeeeeeebbbbbbbebebeebeeeeeebbbeebebeebebb--------bbeee----beebbebbebbbebebebbbebeebebbbebebeeeeebe:    
Contact         :                                                      b                                             

queryA       316:HSLHGLF--NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN: 413
                :    **    ** * *   *                 *  ** *  **   * *  *    * ** **  * *  *   *  *    *  *         :
3j0a_B_1     258:NTFAGLARSSVRHLDLSHGFVF---------SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL--SYNLLGELYSSNFYGLPK--VAYID: 344
SecStr          :TTHHHHTTS   EEE TT    ---------BB S  SSS     EEE  S     B TTTTTT SS  EEE -- S   S   S S SS TT--  EEE:    
ExpBur          :ebbebbeebebeebbbbebebe---------ebeeebbeebeebebbbbbebebeebeeebbeebeebeebeb--bebbeeeeeebbbeebee--bbebb:    

queryA       414:LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL: 513
                :* ** *  *    *  *  *  ***  *                *  * ** **   *      *   *  *   *  * * *           * ** *:
3j0a_B_1     345:LQKNHIAIIQDQTFKFLEKLQTLDLRDNAL------TTIHFIPSIPDIFLSGNKLVTLPK--INLTANLIHLSENR--LENLDILYFLLR-VPHLQILIL: 433
SecStr          :  S       SSSS S     EEEEET  S------   SS    SEEEEES        --  TT  EEE  S  --  SSHHHHHHTT- TT  EEE :    
ExpBur          :beebebeebeeebbbebeebebbbbeebbe------bbbeebbebeebebbebeebeebe--eeeebeebbbeebe--beeebbbebbee-beebeebbb:    

queryA       514:SNNNIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-----NTLPASVFN: 607
                :  *       *        ** * *  * *   *             *****  * *  *     *  **  *  *    *  * *     * ***    :
3j0a_B_1     434:NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD---VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA----: 526
SecStr          :SS       SSSSS S TT  EEE  S   SSS  S   SS--- SS B  EE     HHHHTT  TTSTTT  S  EEEEES   SS       S----:    
ExpBur          :eebebeebbeeebbbebeebeebebbebebeebbeeebbeb---beebbbbbebbebeeeebeebeeebbeebeebebbbbbebebeebebeeebe----:    

queryA       608:NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC-----KDSAPF: 702
                :    *  *    *        *    *  *  **   * * * **    * ** * *   *        *  *    *       *  *          *:
3j0a_B_1     527:---NLEILDISRNQLLAPNPDV----FVSLSVLDITHNKFICECE-LSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCXXXXXXXXXXF: 618
SecStr          :---   EEEEEEE      S  ---- SS  EEEEEEE    SSS-  HHHHHHHHTTGGG   GGG    S SSS S  TTT      ---------- :    
ExpBur          :---ebeebebbebebbbeeeee----beebeebbbbebebbbeee-eeebeebbeebeeeeebeeeebebeebeeeeeeebeeeeeeee----------e:    

queryA       703:ELFFMINTSILLIFIFIVLLIHFE: 726
                : **        *    *     * :
3j0a_B_1     619:SLFIVCTVTLTLFLMTILTVTKFR: 642
SecStr          :HHHHHHHHHHHTTTHHHHHHSS  :    
ExpBur          :eeeeeeeeeeeeeeeeeeeeeeee:    
Contact         : b  b   b                                                                                           


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