Protein Model on 3j0a_A_1 (TEMPLATE: 3j0a )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [797 aa] Toll-like receptor 5 :TLR5_HUMAN
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3j0a_A_1 identity=30.8%
queryA       199:LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL-NVVGNDSFAWL: 297
                :*  * * *  *    *  *     ** * *    *           *     ***                      ** **** *         **  *:
3j0a_A_1      75:LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV-------LKDGYFRNLKA--------------------LTRLDLSKNQIRSLYLHPSFGKL: 147
SecStr          :  EEE TT    EE TTSS S SS   EE TT   SS  -------STT   SS SS--------------------  EEEEES         GGGGT :    
ExpBur          :bebbbbbebebeeeeeebbebbeebeebebeebebeebe-------beeebbeebeb--------------------bbebbbbebebebbebbebbeeb:    

queryA       298:PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC--------LEHLNMEDN----DIPG------IKSNMFTGLI: 379
                :  *       * *     * *  *            *    ***        *  * **        ** *    *    ** *       **  *    :
3j0a_A_1     148:NSLKSIDFSSNQIFLVCEHELEPL---------QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL: 238
SecStr          :SS  EEEEESS      SGGGHHH---------HH SS   EE  SBS         SSS TTTT  BSEEB SS  SSTTTTSGGGGTS S  BSEEE :    
ExpBur          :eebeebebbebebeebeeebbeeb---------eeeeeeebbbbbbbebebeebeeeeeebbbeebebeebebbebeeebeebbebbebbbebebebbbe:    

queryA       380:NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV: 479
                :          *         **  ** *    * *         *  *  *  * ** *  * *          ** *     ****    *    *   :
3j0a_A_1     239:AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL: 337
SecStr          : SS  B SSS SSSTTGGGTTTTTTTTS   EEE TT    EE S  SSS     EEEEES    E-E TTTTTT SS  EEEEES   S   S S SS :    
ExpBur          :beebebbbebebeeeeebeebbebbeebebeebbbbebebeebeeebbeebeebebbbbbebebee-ebeebbeebeebeebebbebbeeeeeebbbeeb:    

queryA       480:PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP-------------------------: 554
                :*                               **  * ** * *     ****  ***  * *     *  *  *                         :
3j0a_A_1     338:PKV--------------------------AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI--HFIPSIPDIFLSGNKLVTLPKINLTANLIHLS: 409
SecStr          :TT -------------------------- EEE  S       SS S S     EEEEET  S   --SS  S SEEEEES          TT  EEE  :    
ExpBur          :eeb--------------------------bebbbeebebeebeeebbbebeebebbbbeebbebbb--eebeebeebebbebeeeeebeeeeebeebbbb:    

queryA       555:---------IYFLKGLSHLHILNLESNGF-----DEIPVE-------------------------VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL: 615
                :          ***    ** ** *  * *     *  * *                         **  *  *    *  * ** **  **     *  *:
3j0a_A_1     410:ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL: 509
SecStr          :S    SSTTHHHHTT TT  EEEEES       SSSSS S TT  B EEES   SSS  S   SS SS B  EE     HHHHTT  TTSSSS  S SEE:    
ExpBur          :ebebeeebbbebbeebeebeebbbeebebeebbeeebbbebeebeebebbebebeebbeeebbebbeebbbbbebbebeeeebeeeeeebeeebeebebb:    

queryA       616:NLQKNLITSV---------------EKKVFGP---AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK: 697
                : *  *  *                       *    *  *  **   * * * **    * ** * *   *        *  *    *       *  * :
3j0a_A_1     510:SLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECE-LSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCX: 608
SecStr          :EEES   SS       S   EEEEEEE      S   SS  EEEEEEE    SSS-  SHHHHHHHTTTTT   GGG   SS SSS S  TTT      -:    
ExpBur          :bbbebebeebebeeebeebeebebbebebbbeeeeebeebeebbbbebebbbeee-eeebbebbeebeeeebbeeeebebeebeeeeeeebeeeeeeee-:    

queryA       698:DSAP-----FELFFMINTSILLIFIFIVLLIHFEGWRISFYWNVSVHRVLGFKEIDRQTEQFEYAAYIIHAYKDKDWV----WEHFSSMEKEDQSLKFCL: 788
                :         * **        *    *     *                              * **     **  **      *             * :
3j0a_A_1     609:XXXXXXXXXFSLFIVCTVTLTLFLMTILTVTKFRXXXXXXXXXXXXXXXXDHPQ-GTEPDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCF: 707
SecStr          :--------- HHHHHHHHHHHHHHHTTTSHHHH ----------------   G-GGSSS    SEEEE  STTHHHHHHTHHHHHHSTTTTTT S EE :    
ExpBur          :---------eeeeeeeeeeeeeeeeeeeeeeeee----------------eeee-eebeeebebbbbbbbbeeeeebbeebbbeebeeeeeeeeebebbb:    

queryA       789:EERDFEAGVFELEAIVNSIKRSRKIIFVITHHLLKDPLCKRFKVHHAVQQAIEQNLDSIILVFLEEIPDYKLNHALCLRRGMFKSHCILNWPVQKERIGA: 888
                :*****  *      *   *  ****      * * *  *       *            * *       * *       **       * **      * :
3j0a_A_1     708:EERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLE-AFSYAQGRCLSDLNSALIMVVVGSLSQYQLMKHQSI-RGFVQKQQYLRWPEDFQDVGW: 805
SecStr          :SSSS  SSS HHHHHHHHHHHSSEEEEEE TTHHHHTSTTH-HHHHHHS    SS TTEEEEESS   SSS  S SST-THHHHTT      SSSTTTTH:    
ExpBur          :eeeeeeeeeeeebbbeebbebbbbbbbbbbeebbeebbeeb-beebeeeeebeeeeebbbbbbbeeeeeebeeeeebb-eebeebeeebeebeeeeeeee:    

queryA       889:FRHKL: 893
                :* ***:
3j0a_A_1     806:FLHKL: 810
SecStr          :HHHHH:    
ExpBur          :beeeb:

Input Residue Numbers for Focused Sites

ex) 2,15,123