Protein Model on 3ciy_C_1_B_1 (TEMPLATE: 3ciy )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) C 1 (A) polymer(polypeptide(L)) [661 aa] Toll-like receptor 3 :TLR3_MOUSE
2 b B 1 (D) polymer(polyribonucleotide) 46-MER 62Q 64R 86T(S) 88S 110E 112S 489R 515N 517N 539H 541N 543A 571S 573G (identity: 92.9 %/77.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3ciy_C_1 identity=77.8%
queryA        28:CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE: 127
                :***   **********  ***** ****************  ********  ** *** ********** ** ************* ** ** *******:
3ciy_C_1       2:CTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTE: 101
SecStr          :    SSEEE       S    S SS SEEE  SS  S   TTS SS    SEEE  SS      THHHHH SS  EEE  S       GGGGTT SS  E:    
ExpBur          :eeeeeeebebeeeebeebeeeeeeebebbbbbebebeebebeebeebeebeebebbebebeebeeebbeebeebebbbbeebebeeeeeebbeebeebee:    
Contact         :                                  b b                     b b                     b b               

queryA       128:LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF: 227
                :* ****** *** ***  ***** *************** ***********  *** ** ****    **** ** ****  ********  ** ** * :
3ciy_C_1     102:LDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALL: 201
SecStr          :EEE S       S TTSS SS  EEEE SS  S     SS   SS  EEE  SS   EE TTTSTT SS   SEEE  S    EE TTSSTTSS   EEE:    
ExpBur          :bbbeebebeeeeeebbeebeebeebbbbebebeebebbeeebbeebebbebbebebebbeeebbebbeebebeebbbbebebeebbebbbebbeebebbb:    

queryA       228:LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL: 327
                :*** ** * ****** ** **** **** * **  **  ** ******** ********  *** **  ** * *  ******* *   *  ** * ***:
3ciy_C_1     202:LNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL: 301
SecStr          :  S    HHHHHHHHHHTTTS   EEE  SS  SEE TTGGGGGGGS   EEE  SS   EE TTTTTT TT  EEE  S  B EE GGGGTT SS  EE:    
ExpBur          :beebebeeeebbebbebbbebebeebbbbebebeebeeebbbbbeebebbebbbbebebeebeebbbebbeebeebbbeebebeebeeebbebbeebeeb:    

queryA       328:NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF: 427
                : *** ***      * * ********** ** *** ** **  *** ****  *******  **** ***************  ****** ****    *:
3ciy_C_1     302:SLKRAFTKXXXXXXSHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTF: 401
SecStr          :E TT B  ------   EE TTSSTT TT  EEE  S  B    TTTTTT SS  EEE TT BSS  EE TTTTTGGGGS   EEE  SS   EE TTTT:    
ExpBur          :bbeebbbe------eebebbeebbeebeebeebbbbebebbebeeebbeebeebeebbbbebbeebeebeeebbebbeebebeebebbebebeebeebbb:    

queryA       428:SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE: 527
                :**** *  ******** * * ******* ***************   ********************** ***** ******************* * **:
3ciy_C_1     402:SWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLE: 501
SecStr          :TT TT  EEE  SS  EE   SGGGTT TT  EEE  S SEEE  TTTTTT TT SEEE TTS EE  SSSS TTTT  S  EEE  SS      TTTTT:    
ExpBur          :eebbebeebbbbebebebebebebbeebeebeebebbebeebbbeeebbeebeebeebbbeebebeebeeeebbbeebeebbebbbbebebeebeeebbe:    
Contact         :                                                             b                         b b          

queryA       528:GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK: 627
                :*** ***** *********   *****  ***************** ***** *** ***** * ******* *    *  * ** **************:
3ciy_C_1     502:GLENLEILDFQHNNLARLWXXXNPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEK: 601
SecStr          :T TT  EEE  S    TT ---  S     STT TT  EEE  SS   EE TTTTTT  S  EEE  SS   EE TTS SS SS  EEE TTS      H:    
ExpBur          :ebeebeebebbebebbebb---eeeeebebbeebeebeebbbeebebeebbeebbeebeebebbbbbebebeebeeebbebbeebeebbbbebebeebee:    
Contact         :           b b b                           b b                                                      

queryA       628:KVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK: 697
                : **** * **  *************** ******* ***** *** ******* ** ***  ********:
3ciy_C_1     602:DVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTPHHYYGFPLKLFDTSSCK: 671
SecStr          :HHHHHHHSS SEEE TT  EE STTTTHHHHHHHHH   B TTTTTTTBEEESGGGTT BTTS  GGG  :    
ExpBur          :ebbbebbeebeebbbbebebbbeeebbbebbebbeeeebebeebeeebebeeeeeeeeeebeebebeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123