Protein Model on 3cig_A_1_E_1 (TEMPLATE: 3cig )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [663 aa] Toll-like receptor 3 :TLR3_MOUSE
2 b E 1 (E) branched(oligosaccharide) 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 398N 399E (identity: 100.0 %/77.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3cig_A_1 identity=77.6%
queryA        27:KCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT: 126
                : ***   **********  ***** ****************  ********  ** *** ********** ** ************* ** ** ******:
3cig_A_1       1:QCTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLT: 100
SecStr          :  B  TT  B  SS   S   SS SS S EE TTS  S   TTTTSTTTT SEEE  SS      THHHHHSTT  EEE TT       TTSTTS  S  :    
ExpBur          :ebeeeeeebebbeeeeeebbeebeeebebbebbebebeebebeebeebeebeebebbebebeebeeebbeebeebeebbbbebebeebeeebbeebeebe:    

queryA       127:ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL: 226
                :** ****** *** ***  ***** *************** ***********  *** ** ****    **** ** ****  ********  ** ** *:
3cig_A_1     101:ELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFAL: 200
SecStr          :EEE TTS      S TTTT TT  EEE  SS        SSS  TT  EEE  SS   EE SGGGGGGTT EESEEE  S    EE TTTTTTSSEE EE:    
ExpBur          :ebbbebbebeeeeebbbeebeebeebbbbebbbeebebbeeebbeebeebbbbebebebbeeebbebbeebebeebbbbebebeebbeebbeebeebbbb:    

queryA       227:FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY: 326
                : *** ** * ****** ** **** **** * **  **  ** ******** ********  *** **  ** * *  ******* *   *  ** * **:
3cig_A_1     201:LLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRY: 300
SecStr          :E TTS   HHHHHHHHHHHSSS   EEE  SS   EE TTTTGGGTTS   EEE  SS   EE TTTTTT TT  EEE  S  B EE TTTTTT TT  E:    
ExpBur          :ebeebebeeebbbebbebbbebebeebbbbebebeebeeebbbbbeebebbebebbebebeebeebbbbebeebeebbbeebebeebeeebbebbeebbe:    

queryA       327:LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA: 426
                :* *** ***** **** * ********** ** *** ** **  *** ****  *******  **** ***************  ****** ****    :
3cig_A_1     301:LSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGT: 400
SecStr          :EE TT B    SSS    EE TTTTTT  S  EEE  S  B    TTSSTT TT  EEE TT BSS  EE TTTTGGGTTS   EEE  SS   EE TTT:    
ExpBur          :bbbeebbbeeeeeeeeebebeeebbeebeebeebbbbebebeebeeebbeebeebeebbbbebbeebeebeeebbebbeebebeebebbebebeebeebb:    
Contact         :                                                                       bb                           

queryA       427:FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML: 526
                :***** *  ******** * * ******* ***************   ********************** ***** ******************* * *:
3cig_A_1     401:FSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLL: 500
SecStr          :TTT TT  EEE  SS  EEE  STTSTT SS  EEE  S SEEE  TTTTTT TT  EEE TT  EES S SS TTTT TT  EEE  S   S   TTTT:    
ExpBur          :beebbebeebbbbebebebebebebbeebeebbebebbebeebebeeebbeebeebeebbbeebebeebebeebbbeebeebbbbbbbebebeebeebbb:    

queryA       527:EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE: 626
                :**** ***** *********          ***************** ***** *** ***** * ******* *    *  * ** *************:
3cig_A_1     501:EGLENLEILDFQHNNLARLWXXXXXXXXVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVE: 600
SecStr          :TT TT  EEE  SS TTT  --------  S  S TT  EEE TTS      TTTTTT TT  EEE  SS      TTTTTT  S  EEE  SS      :    
ExpBur          :eebeebeebbbbebebbeee--------eebbeebeebeebbbbebebeebeeebbeebeebeebbbbebebeebeeebbebbeebeebbbbebebeebe:    

queryA       627:KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCK: 697
                :* **** * **  *************** ******* ***** *** ******* ** ***  ********:
3cig_A_1     601:KDVFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTPHHYYGFPLKLFDTSSCK: 671
SecStr          :HHHHHHHHTS SEEE  S  EE SHHHHHHHHHHHHH   EETTHHHH BEEESGGGTT BGGG   SS  :    
ExpBur          :eebbbbbbeebeebbbbebebbbeeebbeebbebbeeeebebeeeeeebebeeeeeeeeeebeebeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123