Protein Model on 3b2d_A_1_F_1 (TEMPLATE: 3b2d )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [601 aa] CD180 antigen :CD180_HUMAN
2 b F 1 (F) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 484R(L) 486M(D) 488R(A) 510I(V) 512D(N) 534I(H) (identity: 0.0 %/29.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:3b2d_A_1 identity=29.4%
queryA        31:SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL: 130
                :      *  * *   ** **     *    * *       * *   ** **     *        *    *  * *  * *             *  * *:
3b2d_A_1      10:ANKTYNCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFL: 109
SecStr          :TTTEEE TTS  SS  TTS TT  EEE TTS  SEE TTTTTT TT SEEE TTS   EE TTTTTT TT  EEE TT    EE TTTT   TT  EEE :    
ExpBur          :eeebbbbeeeebeebbeebeeebeebebbebebeebeeebbeebeebbebbbbebebeebeeebbeebeebbbbbbebbebeebbeebbeebeebeebeb:    

queryA       131:MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN: 230
                :    *      *     **  * *  *  ** *        **  *   ** *     *            *    *  *    * *             :
3b2d_A_1     110:IQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDS-----------: 198
SecStr          :TTS    GGGS  TT TT  EEE TTSS       TT   TT  EEE TT    EE HHHHHTTTT SSEEEE TT    EE TTTTTT-----------:    
ExpBur          :eebebeebeebbbebbeebebbebbebebeebebbeebbbeebeebbbeebebeebbeebbebbeebeebebbbbebebeebeebbbee-----------:    

queryA       231:VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL--FNVRYLN: 328
                :                                   * *  *       *    * *      *  **   *             *  * **    *  **:
3b2d_A_1     199:-----------------------------------TIFQSLNFGGTPNLSVIFNGLQNSTTQSL-WLGTFEDI-----DDEDISSAMLKGLCEMSVESLN: 257
SecStr          :----------------------------------- EEEEEE TT S HHHHHHHTTT EEEEE-E    TTS-----    B TTTTGGGGGSEEEEEE:    
ExpBur          :-----------------------------------eebeebebbbbeebebbbebbeebebeeb-ebbbeeee-----eeeebeeebbebbeebebeebb:    

queryA       329:LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE--SD: 425
                :*                *    **    *  *        *  * *  **  ** * ** * *  *       * ** *  * *         *      :
3b2d_A_1     258:LQEH---------RFSDISSTTFQCFTQLQELDLTATHLKGLPSGM-KGLNLLKKLVLSVNHFDQLCQISAANFPSLTH--LYI----RGNVKKLHLGVG: 341
SecStr          : TT --------- BSS  TTTTSGGGG SEEE TT   S   SS -SS TT  EEE  S   SBGGGG GGG TT  E--EE ---- S SS  B  SS:    
ExpBur          :bebb---------ebeeeeeebbebbeebeebebbbbebeebeeeb-ebbeebeebbbbebebeebeebbbebbeebbb--beb----eebeeebebeeb:    

queryA       426:AFSWLGHLEVLDLGLNEI-GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD: 524
                :    ** *  ***  * *            *       ** *  * *    *   * *  * *    *       **** *  *  * *        *  :
3b2d_A_1     342:CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRL-HINAPQSPFQNLHFLQVLNLTYCFLDTSNQH: 440
SecStr          :TTTT TT  EEE TTS   EEEESTTTSTT TT  EEE  S S EEE TTTTTT TT  EEE TT  E-E  TT  TTTT TT  EEE TT    TT TT:    
ExpBur          :bbeebeebebbbbbebebebeebbeebbeebeebeebbbbebeebbbeeebbeebeebeebbbbebeb-ebeeeebbbeebeebebbebbebebebebee:    
Contact         :                                                           b b b                     b b            

queryA       525:MLEGLEKLEILDLQHNNLARLWKHANPGGPIY---FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS--LNLQK: 619
                : * **  *  * *  *            * *     *     *  * * * *   *    *  *      **     * *          **   ***  :
3b2d_A_1     441:LLAGLPVLRHLNLKGNHFQD--------GTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDL---SHNSLTCDSIDSLSHLKGIYLNLAA: 529
SecStr          :TTTT TT  EEE TT   GG--------GEE SS GGGG TT  EEE TTS   EE TTTTTT TT  EEE --- SS   GGGGGGGTT  S EEE  S:    
ExpBur          :bbbebeebeebbbebbebee--------bebeeebbbeebebbebbbbbebebeebeeebbeebeebeebbb---bebebebebbbbbeebeebbbbbbe:    
Contact         :         b                                                                                          

queryA       620:NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS-SC: 696
                :* *         *            ** ****  *  *  *  *      * *    *  **   *  * * *   **:
3b2d_A_1     530:NSINIISPRLL-PILSQQSTINLSHNPLDCTCSNI-HFLTWYKENLHKL-EGSEETTCANPPSLRG--VKLSDVKLSC: 602
SecStr          :S      TTSH-HHHHTSSEEE TT  EE SGGGH-HHHHHHHH TTSE-ETSTT  EEESSSSTT--  TTT     :    
ExpBur          :bebeebeeebb-ebbeebeebbbbebebbbeeebe-ebbebbeebeeeb-eebeebebeeeeeeee--eebeebeeee:

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