Protein Model on 2z63_A_1_B_1 (TEMPLATE: 2z63 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR3_HUMAN) A 1 (A) polymer(polypeptide(L)) [570 aa] Toll-like receptor 4, Variable lymphocyte receptor B :TLR4_HUMAN:Q4G1L2_EPTBU
2 b B 1 (B) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose 319H(N) 322F(T) 323N (identity: 33.3 %/31.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:2z63_A_1 identity=31.0%
queryA        37:CSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ: 136
                :*  *     ** **     * *  * ** *    *     *  **     *   *    * *  *  * *  *    *    *     *  *        :
2z63_A_1      14:CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA: 113
SecStr          :  SS  SS  SSS SS  EEE  S    EE TTTTTT SS  EEE TT    EE TTTTTT TT  EEE TT    EE TTTTTT TT  EEE TTS   :    
ExpBur          :beeeebeeebeebeeebeebebbebbbeebeeebbebbeebeebbbbebebebbeebbbeebeebeebebbbbebeeebebbbeebeebeebbbbebebe:    

queryA       137:KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFAN--SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL: 233
                :   * *    * *  *   **   * **      * **  * ** ****      *            * ** *      ** *  * **  * * *   :
2z63_A_1     114:SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRN-NF: 211
SecStr          : STT S TT TT  EEE  SS        GGGGG TT  EEE TTS   EE GGGGHHHHT TT   EEE TT    EE TTTTTT -EEEEEEEES-  :    
ExpBur          :ebeebbbbebeebeebbbbebebeebebbebbeebeebeebbbbebebeebeeebbebbeebeebebbbbbbebebeebeeebbeeb-ebeebbbeb-bb:    

queryA       234:GPSLTEKLCLE-LANTSIRNLSLS----NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN: 328
                :      * *   **      * *        *         **   ***                   *  * *       *  **      * **    :
2z63_A_1     212:DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL--CNLTIEEFR--------------LAYLDYYL---DDIIDLF----NCLTNV----: 284
SecStr          :S TTHHHHHHHTTTT EEEEEEEEE    SS EE  TTTTGGG--GGSEEEEEE--------------EEETTEEE---S STTTT----GGGTT ----:    
ExpBur          :eebeebeebbebbeebebebbbbbbeebeeeeeebeeebbeeb--eebebeebe--------------bbbeebeb---ebbeebb----ebbbeb----:    
Contact         :                                                                                          b  bb     

queryA       329:LKRSFTKQSISLASLPKIDDFS--FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA: 426
                :   **   *          ***  * *   **  *      *  *                     *  *   ** *         *   *  *      :
2z63_A_1     285:--SSFSLVSVTIE---RVKDFSYNFGW-QHLELVNCKFGQFPTLK---------------------LKSLKRLTFTS---------NKGGNAFSEVD---: 345
SecStr          :--SEEEEES EE ---S  B  S    -SEEEEES B SS  B B--------------------- SS  EEEEES--------- BS  B    B---:    
ExpBur          :--bbbbbbbbbbe---ebeebeeebeb-eebbbbebebeebbebe---------------------beebeebbbbe---------beeeeebeebe---:    

queryA       427:FSWLGHLEVLDLGLNEIG-QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM: 525
                :   *  ** ***  *         *   *        ** *       * *     *  *      **   *  * *  ****  ** *           :
2z63_A_1     346:---LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNLIYLDISHTHTRVAFNGI: 440
SecStr          :--- TT  EEE  SS  BEEEEEEHHHHT S   EEE  S SEEEEEEE-EET TT  EEE TTSEEES -TTS TTTT TT  EEE TTS  EE  TTT:    
ExpBur          :---beebebbbbbebebebeebbbeebbebeebeebbbbebeebebeee-bebbeebebbbbeebbbeeb-eeeebbeebeebeebbbbebebebeeebb:    

queryA       526:LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV: 625
                :  **  ** *    *             *  *   *  *  * *            *  *  *       * *   *   *    **    *        :
2z63_A_1     441:FNGLSSLEVLKMAGNSFQENFL------PDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT------: 527
SecStr          :TTT TT  EEE TT EEGGGEE------ S  TT- TT  EEE TTS   EE TTTTTT TT  EEE  SS  S   TTTTTT TT  EEE  S------:    
ExpBur          :bebbeebebbebbebbbeeeeb------bebbee-beebeebbbbebebeebbeebbeebeebebbbbbebebebbbebbbeebeebeebebee------:    

queryA       626:EKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE: 663
                :                   ** ** *  *     * * :
2z63_A_1     528:-------------------NPWDCSCPRIDYLSRWLNK: 546
SecStr          :-------------------S B   TTTTHHHHHHHHH:    
ExpBur          :-------------------bebeeeeeebebbbebbee:

Input Residue Numbers for Focused Sites

ex) 2,15,123