[pdbjlvh2]Protein Model on 1ziw_A_1_M

Protein Model on 1ziw_A_1_M_1 (TEMPLATE: 1ziw )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [629 aa]	Toll-like receptor 3 :TLR3_HUMAN
2	b		M 1 (A)	non-polymer(GOL)	GLYCEROL	206S 207N 208Q 230N 231V 232Q (identity: 100.0 %/99.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1ziw_A_1 identity=99.1%

queryA        30:VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH: 129
                :****************************************************************************************************:
1ziw_A_1       4:VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH: 103
SecStr          : BSSEEE  SS  SS  S S TT SEEE  SS      GGGGGGGTT SEEE  SS      TTHHHH TT  EEE  SS      TTTTTT TT SEEE:    
ExpBur          :eeeeebebbeeeeeebbeebeeebeebebbebebeebebeebeebeebebbebbebebeebeeebbeebeebeebbbeebebeebeeebbeebeebeebb:    

queryA       130:LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN: 229
                :****************************************************************************************************:
1ziw_A_1     104:LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN: 203
SecStr          :  SS      S TTTT TT  EEE  SS  S     SSS  TT  EEE  SS    B HHHHGGGTT EESEEE TT     B TTGGGGSSEE EEE T:    
ExpBur          :bbebebeebeebbbeebeebebbbbbebbbebbebbeeebbeebeebbbbebebebbeeebbebbeebebeebbbbebebeebeeebbebbeebebbbbb:    
Contact         :                                                                            bbb                     

queryA       230:NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL: 329
                :****************************************************************************************************:
1ziw_A_1     204:NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL: 303
SecStr          :T   HHHHHHHHHHHHTTS   EEE TTS   EE TTTTGGGGGS   EEE TTS   EE TTTTTT TT  EEE  S  BSEE TTTTTT TT  EEE :    
ExpBur          :ebebbeebbeebbebbbebebeebbbbebebeebeeebbebbeebebbbbbbbebebeebbeebbeebeebeebebbebebeebeeebbebbeebeebbb:    
Contact         :bbb                                                                                                 

queryA       330:KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW: 429
                :*******      ***************************************************************************************:
1ziw_A_1     304:KRSFTKQXXXXXXLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW: 403
SecStr          :TT B   ------  EE TTTTTT TT  EEE  S  B    TTTTTT TT  EEE TT BS   EE TTTTGGGTTS   EEE TTS   EE TTTTTT:    
ExpBur          :eebbbee------ebebeeebbebbebbeebbbebbebeebeeebbebbeebeebbbbebbeebeebeeebbebbeebebeebbbbebebbebeeebbee:    

queryA       430:LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL: 529
                :****************************************************************************************************:
1ziw_A_1     404:LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL: 503
SecStr          : TT  EEE  SS  EEE  SGGGTT TT  EEE  S SEEE  TTTTTT TT  EEE TTS  B TT SS TTTT TT  EEE  SS      TTTTTT :    
ExpBur          :bbebeebebbebebebebebebbeebeebebbebbebeebebbeebbeebeebeebbbeebebeebebeebbbeebeebbbbbbbbbebeebeeebbebb:    

queryA       530:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV: 629
                :****************************************************************************************************:
1ziw_A_1     504:EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV: 603
SecStr          :TT  EEE  SS  GGGGSTTSTTS   TTTT TT  EEE  SS      TTTTTT TT  EEE  SS      TTTTTT TT  EEE TTS   B  HHH:    
ExpBur          :eebeebbbbebebeebbeeebeeeebebbeebeebbebbbbbbebeebbeebbeebeebeebbbbebebeebeeebbeebeebebbbbbebebeebeeeb:    

queryA       630:FGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET: 664
                :***********************************:
1ziw_A_1     604:FGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET: 638
SecStr          :HHHHHTT SEEE TT    B     SSEE  SS  :    
ExpBur          :beebeeebeebbbeebeeeeeeeeeeeeeebeeee:

Protein Model on 1ziw_A_1_M_1 (TEMPLATE: 1ziw )

Input Residue Numbers for Focused Sites