Protein Model on 8y6o_I_1_IA_1 (TEMPLATE: 8y6o )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) I 1 (I) polymer(polypeptide(L)) [597 aa] Probable ATP-dependent RNA helicase DDX23 :DDX23_HUMAN
2 b IA 1 (Y) polymer(polypeptide(L)) [229 aa] U11/U12 small nuclear ribonucleoprotein 48 kDa protein :SNR48_HUMAN 327V(I) 328A(S) 331D 334S(F) 335V(R) (identity: 20.0 %/35.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8y6o_I_1 identity=35.2%
queryA         1:MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGS: 100
                :          * *           ** **   **  *   *    ******** ** **                                         :
8y6o_I_1     390:IRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLL---------------------------------------: 450
SecStr          : S TTTS   HHHHHHHHHHT  S  HHHHHHHHHHHHT  EEEE  TTSSHHHHHHHHHH---------------------------------------:    
ExpBur          :bbebeebebbeebeebbeebeeeebeebbbbbbbbbebbbbbbbbbebeeebbebbbbbbb---------------------------------------:    

queryA       101:AFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDK: 200
                :                                                                                                    :
8y6o_I_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       201:GHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP----------------: 284
                :                                                                                                    :
8y6o_I_1     451:------------------------------------------------------------------------------------VWITTLPKIDRIEESD: 466
SecStr          :------------------------------------------------------------------------------------HHHHHS HHHHH    :    
ExpBur          :------------------------------------------------------------------------------------bbbbebeeeebeeeee:    

queryA       285:NAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFI: 384
                :  * * *  * **** *       * *       *    ***    **   *  *  **  ***** *      * **     ******     *     :
8y6o_I_1     467:QGPYAIILAPTRELAQQIEEETIKFGKPLG---IRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDV: 563
SecStr          :S  SEEEE  SHHHHHHHHHHHHHHHTTTT---  EEEESS SSHHHHHHHHHT  SEEEE HHHHHHHHHTTS   TT  EEEE  HHHHHHH  HHHH:    
ExpBur          :ebbbbbbbbbeeebbbebeeebeebbeebe---bebbbbbbbeeeeebbeebeebbbbbbbbbbebbebbeeeebebebbbbbbbbbbebbeeeeeeeeb:    
Contact         :                                          bb  b  bb                                                 

queryA       385:NRMHNQIPQVTSDGKRLQVIVCSATLHSFDV--KKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPG----: 478
                :       *                 *  *     *     *   *          *  *               ***  *  *          **     :
8y6o_I_1     564:QKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTAT---------MPPAV---------------ERLARSYLR----------RPAVVYI: 629
SecStr          :HHHHHHS SSS   S TTTT HHHHHHHHHHSSSS  EEEEEESS---------  HHH---------------HHHHHHH S----------S EEEE :    
ExpBur          :eebeeebeeebebeeeeebbeeeebeebbeebeebebbbbbbbee---------eeeeb---------------eebbeebbb----------eebbbee:    

queryA       479:--ANSPEMWSEAIKILKGEYAVR----AIKEHKMDQAII-FCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLIC: 571
                :  *  *    *    *  *   *    ** *   *  ** *   *  ** *       *              ***      *   *   * *    *  :
8y6o_I_1     630:GXAGKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMG---------YNACTLHGGKGQEQREFALSNLKAGAKDILVA: 720
SecStr          : -   HHHHSEEEEEE  STHHHHHHHHHHHT   S EEEE SSHHHHHHHHHHHHHTT---------  EEEESTTS HHHHHHHHHHHHHTS  EEEE:    
ExpBur          :e-eeebbeebebebeebeeeebeeebbebbeeeeeebbbbbbeeeeebeebbebbeeee---------eebbebbeeeeeeeeeebeeebeeeebebbbb:    

queryA       572:TDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHV: 630
                :**** *****  *  * *         * ***** ***   * **     *   * *  :
8y6o_I_1     721:TDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYEL: 779
SecStr          : HHHHTT     BSEEEESS  SSHHHHHHHHTTB  SS   EEEEEE GGGGGGHHHH:    
ExpBur          :bbebbeebeeeebebbbbbebbeebeebeebbbebbeeeeebbbbbbbbeebeebbbeb:

Input Residue Numbers for Focused Sites

ex) 2,15,123