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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | VA 1 (SW) | polymer(polypeptide(L)) [444 aa] | ATP-dependent RNA helicase DDX18 :DDX18_HUMAN | |
2 | b | E 1 (L3) | polymer(polyribonucleotide) | 28S rRNA | 328A(N) 335V(K) (identity: 0.0 %/38.7 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8fku_VA_1 identity=38.7% |
queryA 15:QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR: 114 : * ** * ** ** * * * * ** ****** ** ** : 8fku_VA_1 192:KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELI--------------------------------------------------: 241 SecStr :HHHHHHT B HHHHHHHHHHHHT EEEE TTSSHHHHHHHHHHHHH--------------------------------------------------: ExpBur :ebbeebeeeebeebbeebbeebbeeebbebbbebeeebebbbbbbbbbbb--------------------------------------------------: queryA 115:EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL: 214 : : 8fku_VA_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 215:AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYI: 313 : * * * ** * **** ** * : 8fku_VA_1 241:--------------------------------------------------------------IVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH: 278 SecStr :--------------------------------------------------------------HHHTT GGG SEEEE SSHHHHHHHHHHHHHHGGG : ExpBur :--------------------------------------------------------------beeeebeeebbbbbbbbbbbebbbbbbbbbbebbbeeb: queryA 314:DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS: 412 : ** ** * ** * * **** ** * ** **** * * * * * *** : 8fku_VA_1 279:VHTYG---LIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT------RRQTMLFSAT---: 366 SecStr : EE---EE TTS HHHHHHHHHH SEEEE HHHHHHHHHH TT TT EEEE SHHHHHHHT HHHHHHHHHHS S------S EEEEEESS---: ExpBur :ebeeb---bbbeeeeeeebeeebeebbbbbbbbbeebbebbeebeebeeeebebbbbbbbebbbeeeeeeebeebbeebee------ebbbbbbbee---: Contact : b b queryA 413:FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF: 512 : : 8fku_VA_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 513:CRTKIDCDNLEQYFIQQGGGPDKKGHQFS-----------------------------------------------------------------------: 541 : : 8fku_VA_1 367:-----------------------------QTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMS: 437 SecStr :----------------------------- HHHHHHHHHHS SS EEEE TT EEEEEE GGGHHHHHHHHHHHSSSSEEEEEES HHH: ExpBur :-----------------------------eeeebeebbeebbeeeebebebeeeeeeeeeeebebbbbebebeebbbbbbbbbeebeeebbbbbbbbbbb: queryA 542:---------------CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR: 605 : ** * * * * * ******** ** * ** * ** **: 8fku_VA_1 438:VKYHYELLNYIDLP-VLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGR: 515 SecStr :HHHHHHHHHHTT - EEE TTS HHHHHHHHHHHHH SSEEEEEEHHHHTTS SEEEE S S HHHHHHHHHH: ExpBur :bebbeebbeeeebe-bebbbbebebeebeebbeebeeeeeebbbbbbbbbbeeebbebebbbbbbbbeebeebbbbbbe: |