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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | J 1 (D) | polymer(polypeptide(L)) [400 aa] | RNA helicase :S6CCW7_SCHPM | |
2 | b | A 1 (1) | polymer(polyribonucleotide) | RNA (1422-MER) | 303L(F) 307K 327V(A) 328A(N) 330R 331D(A) 335V(K) (identity: 28.6 %/41.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8eup_J_1 identity=41.4% |
queryA 13:IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ: 112 :* * ** * ** *** * * *** * ****** ** ** * * : 8eup_J_1 100:IQKAIKEMGFETMTEIQKRSIPPLLAGRDVLXXAKTGSGKTLAFLIPTIEMLY-----------------------------------------------: 152 SecStr :HHHHHHHTT S HHHHHHHHHHTT B -- TTSSHHHHTTHHHHHHHH-----------------------------------------------: ExpBur :beebbeebebeeeeeebeeebeebeeeeeee--eeeeeebbebbbebbbeebe-----------------------------------------------: queryA 113:SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL: 212 : : 8eup_J_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 213:GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT--KFLP-NAPKALIVEPSRELAEQTLNNIKQF: 309 : ** * * * * **** * * : 8eup_J_1 153:--------------------------------------------------------------------ALKFKPRNGTGVIIISPTRELALQIFGVAKEL: 184 SecStr :--------------------------------------------------------------------HHT STT EEEE SSHHHHHHHHHHHHHH: ExpBur :--------------------------------------------------------------------eeebeeeebbbbbbbbbbbbbbeebebbbebb: Contact : b b queryA 310:KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA: 408 : ** *** * * ** * **** ** * * * ** **** * * * * : 8eup_J_1 185:LKYHHQT---FGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILP----------------: 265 SecStr :TTTSSS ---EEEE TTS TTTTTHHHHTT EEEE HHHHHHHHHH SS S EEEE HHHHHHHT HHHHHHHHHHS ----------------: ExpBur :beebebe---ebbbbeeeeeeebbeebeebbbbbbbbbebbbbbbeebeebeeeebebbbbbbbebbeeeebeebbeebbeebb----------------: Contact : bb bb b queryA 409:TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ: 508 : : 8eup_J_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 509:AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC----------------------------------------------------------------: 544 : : 8eup_J_1 266:------------------------------------SENRQTLLFXXXXXXKVEDLARISXXXXXXXXXXXXXXXXXXXXXXEQGYVVVDSDKRFLLLFS: 329 SecStr :------------------------------------ TT EEEE ------ HHHHHHT ---------------------- EEEE HHHHHHHHHH: ExpBur :------------------------------------eeebbbbbe------eeeebeeee----------------------ebbbbebebbebbbbbbb: queryA 545:-------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG: 604 : *** * * * * ** ***** ** * ** * ** *: 8eup_J_1 330:FLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLD-LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG: 425 SecStr :HHHHTTTSEEEEEES HHHHHHHHHHHHHTT EE-S TTT HHHHHHHHHHHHH SSEEEEEETTTSTTS SEEEE S S HHHHHHHH : ExpBur :ebeebeeebbbbbbbbbebbebbbebbeeeebebeb-bbeebebeebeebeeebeeeeeebbbbbbbbbbeeeeeebebbbbbbbbbbbeebeeeee: |