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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [374 aa] | ATP-dependent RNA helicase SUB2 :SUB2_YEAST | |
2 | b | C 1 (C) | polymer(polypeptide(L)) [374 aa] | ATP-dependent RNA helicase SUB2 :SUB2_YEAST | 516K(T) 517I(T) 520D(N) 546H 547G 548D(H) 549R(M) 550K 551P(Q) 552H(E) 595E (identity: 36.4 %/31.2 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5suq_A_1 identity=31.2% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* ** * * * ** * *** * * *** * * : 5suq_A_1 64:FKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQ-----------------------------------------: 122 SecStr :GGGG HHHHHHHHHTT S HHHHHHHHHHTTT EEEE TTSSSHHHHHHHHHH-----------------------------------------: ExpBur :beebebeeebbebbeebeeeebbebbeebbeebeeeebbbbbbeeeeebebbbbbbbbb-----------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 5suq_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKF----LPNAPKALIVEPSRELA: 299 : * ****: 5suq_A_1 123:-------------------------------------------------------------------------------QLDPVPGEVAVVVICNARELA: 143 SecStr :-------------------------------------------------------------------------------H TT EEEE SSHHHH: ExpBur :-------------------------------------------------------------------------------ebeeeeebbbbbbbbeeeebb: queryA 300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLEN---GVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTS: 396 : * * * ** * ** * * *** ***** ** ** * * ** * * * * * : 5suq_A_1 144:YQIRNEYLRFSKYM--PDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELD---MRRDVQEIFRATP: 238 SecStr :HHHHHHHHHHTTT --TT EEEE TTS HHHHHHHHH TTT SEEEE HHHHHHHHTTTSS TT EEEEETHHHHHHSHH---HHHHHHHHHTTS : ExpBur :eebeeebeebbeeb--eebebbbbebeeeeeebbeebeeeeebbbbbbbbbebbbebbeeeebebeebebbbbbebbebbeeee---beeebeebbeebe: queryA 397:DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEY: 496 : * ** **** * * * * * * * : 5suq_A_1 239:RDK--QVMMFSATL-SQEIRPICRRFLQNP-----------------LEIFVXXXXXXXXXGLQQYYIKLEE---REKNRKLA-----------------: 298 SecStr :SSS--EEEEEES - TTTHHHHHTT SS -----------------EEE --------- EEEEEEE G---GGHHHHHH-----------------: ExpBur :eeb--bbbbbbeeb-eeebbeebeebbeee-----------------eebee---------eeebbebebee---eebeebbe-----------------: queryA 497:AVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEK: 596 : * *** * * ** * ** ** * *** ***** ** * * : 5suq_A_1 299:--QLLDDLEFNQVIIFVKSTTRANELTKLL---------NASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEA: 387 SecStr :--HHHHHS SEEEEE SSHHHHHHHHHHH---------HHTT EEEE SSS HHHHHHHHHHHHTTS SEEEE GGGSSS TTEEEEEESS SSH: ExpBur :--ebbeebebebbbbbbeeeeebeebbeeb---------eeeebebbbbbeebeeeeeeeebebbeeeeeebbbbbeebbeebebeebbbbbbbbbbeeb: Contact : bb b bbbbbbb b queryA 597:QNYVHRIGRVGRAERMGLAISLVATEKEK: 625 : * ** ** ** ***** * : 5suq_A_1 388:DQYLHRVGRAGRFGTKGLAISFVSSKEDE: 416 SecStr :HHHHHHHTTSSGGG EEEEEEE SHHHH: ExpBur :eebebbbebbbbeeeebbbbbbbbeeebe: |