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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | B 2 (B) | polymer(polypeptide(L)) [360 aa] | PROBABLE ATP-DEPENDENT RNA HELICASE DDX6 :DDX6_HUMAN | |
2 | b | A 1 (A) | polymer(polypeptide(L)) [245 aa] | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 :CNOT1_HUMAN | 296R 325G 346T 378Q 382D 383F 386R(I) 410L(F) 412S(P) 413F(L) 416K(Q) 595E(L) 597Q(E) 601H (identity: 50.0 %/34.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:5anr_B_2 identity=34.8% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* * ** * * ** **** * * * * * * ** ** ** : 5anr_B_2 7:FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE-----------------------------------------: 65 SecStr :GGGG HHHHHHHHHTT S HHHHHHHHHHHHT EEEE TTS HHHHHHHHHHH-----------------------------------------: ExpBur :beebebeeebeebbeeeeeeebeebbeebbeebeeeebbbbebbeebebbbbbbbbbbe-----------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 5anr_B_2 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVEP: 294 : * *: 5anr_B_2 66:------------------------------------------------------------------------------------RLDLKKDNIQAMVIVP: 81 SecStr :------------------------------------------------------------------------------------H TTS S EEEE S: ExpBur :------------------------------------------------------------------------------------ebeeeeeebbbbbbbe: queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV: 394 : **** * * * * ** ** * * * **** ** * * ****** **** ** * * : 5anr_B_2 82:TRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTL: 176 SecStr :SHHHHHHHHHHHHHHTTTSSS E--EEE TTS HHHHHHHTTS SEEEE HHHHHHHHHTTSS TT EEEEESHHHHTST---TTHHHHHHHHHTS: ExpBur :eeebbeebbeebeebbeebeebeb--bebbeeeeeeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbee---eeeeebeebbeeb: Contact : b b b b bb b queryA 395:TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG: 494 : * * *** * * * * * * * ** * : 5anr_B_2 177:P---KNRQILLYSATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYV----TER------------QKVHCLNT---------LFSRL------: 241 SecStr : ---TT EEEEEES - HHHHHHHHHH S EEEE B TT EEEEEE ---- GG------------GHHHHHHH---------HTTTS------: ExpBur :e---eebbbbbbbeee-eeebeebbeebbeeeeebeeeeeeebeebebebbeb----eee------------ebbebbee---------beeee------: Contact : b bb b queryA 495:EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD: 594 : * **** * * * ** * * * * * * *** ** * *** * : 5anr_B_2 242:----------QINQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFXXXXDIQAVNVVINFDFPK: 322 SecStr :---------- SEEEEE SSHHHHHHHHHHHHHTT--------- EEEE SSS HHHHHHHHHHHHTTSSSEEEE S ---- TTEEEEEESS S: ExpBur :----------ebebbbbbbeebeebeebbeebeeee---------bebeebbeebeeeebeebeeebbeeebebbbbbeee----ebeebebbbbbbbbe: queryA 595:EKQNYVHRIGRVGRAERMGLAISLVA: 620 : * ***** * **** * : 5anr_B_2 323:LAETYLHRIGRSGXXXXLGLAINLIT: 348 SecStr :SHHHHHHHH B ---- EEEEEE : ExpBur :ebebbeebbebee----eeebbbbbb: Contact :b b b |