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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [365 aa] | Heat resistant RNA dependent ATPase :Q72GF3_THET2 | |
2 | b | B 1 (B) | polymer(polypeptide(L)) [365 aa] | Heat resistant RNA dependent ATPase :Q72GF3_THET2 | 7M(F) 8G(P) 30A 31E(A) 34P 35L 38G(E) 420E 427T(V) 428W(L) 429V(I) 430D(N) 431L(V) 433G(K) 434E(D) (identity: 26.7 %/37.1 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4kbf_A_1 identity=37.1% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* *** * ** *** ** * * * * ** *** ** * * * * * : 4kbf_A_1 3:FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPS---QERGRKPRALVLT--------------------: 79 SecStr :GGGS HHHHHHHHHTT S HHHHHHHHHHTTT EEEE SSS HHHHHHHHHHHH --- TT SEEEE --------------------: ExpBur :beebebeeebeebbeeeeeeebeebbeebbeebbebebbbbbbbbebebbbbbbbbbbeebeee---eeeebebbbbbbb--------------------: Contact : bb bb bb b queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 4kbf_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL: 303 : * ** * **** * : 4kbf_A_1 73:-----------------------------------------------------------------------------------PRALVLTPTRELALQVA: 89 SecStr :----------------------------------------------------------------------------------- SEEEE SSHHHHHHHH: ExpBur :-----------------------------------------------------------------------------------bbbbbbbbeeebbeebb: queryA 304:NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV: 403 : * * ** * * * * ** **** * * * ** * ****** ** * * * : 4kbf_A_1 90:SELTAVA-----PHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR------QT: 178 SecStr :HHHHHH -----TTS EEEE SSS SHHHHHHHHH SEEEE HHHHHHHHHHTSS TT EEEEETHHHHHHTT HHHHHHHHHTS TT ------EE: ExpBur :eebeebb-----ebbebbebeeeeeeeebeebbeebbbbbbbbbebbbebeeeebbebeebebbbbbbbbbbbbeebeeebeebbeebeeeb------bb: queryA 404:IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE: 503 : **** * * * * * * * * ** * * ** : 4kbf_A_1 179:LLFSATLPSW-AKRLAERYMKNPVLINVIKDEPVTYEEEAVPAPVR----------GRLEVLSDLLYVA--------SP---------------------: 238 SecStr :EEE SS HH-HHHHHHHSSSS EEEE GGG SEEEEEE ST----------THHHHHHHHHHHH-------- ---------------------: ExpBur :bbbbbbbbeb-beebbeebbeeeeebebeeeeeeebebbbbebeee----------ebbeebbebbeee--------eb---------------------: Contact : b bbbbb bb queryA 504:HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVH: 601 : * * * *** * * **** ** * * * ** * ******* ** * * *** * *: 4kbf_A_1 239:---DRAMVFTRTKAETEEIAQGLLRLG---------HPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH: 324 SecStr :---SSEEEE SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHHTS EEEE TTTT SS BSEEEESS SSHHHHHH: ExpBur :---ebbbbbbeeeebbeebbebbeeee---------bebebbbeeeeeeebeebbebbbeeebebbbbbeebbeeeebbbbbbbbbbebbeebeebee: |