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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [378 aa] | PROBABLE ATP-DEPENDENT RNA HELICASE DDX6 :DDX6_HUMAN | |
2 | b | A 1 (A) | polymer(polypeptide(L)) [236 aa] | CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1 :CNOT1_HUMAN | 5S(E) 11P(R) 14A(L) 15Q(M) 18E(F) 19E 312Y(H) 485W(F) 486S 487E(R) 488A(L) 505K(Q) 506M(I) 507D(N) 508Q 529Q(L) 530G 540F(Y) 541S 564G 565D(L) 567R 568F(N) 583G(A) (identity: 29.2 %/36.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:4ct4_B_1 identity=36.0% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* * ** * * ** **** * * * * * * ** ** ** : 4ct4_B_1 7:FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE-----------------------------------------: 65 SecStr :GGGG HHHHHHHHHTT S HHHHHHHHHHHTT EEEE SSGGGHHHHHHHHHH-----------------------------------------: ExpBur :beebebeeebeebbeeeeeeebeebbeebbbbbbeeebbbbebeebbebbbbbbbbbbb-----------------------------------------: Contact : b b bb bb queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 4ct4_B_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVEP: 294 : * *: 4ct4_B_1 66:------------------------------------------------------------------------------------RLDLKKDNIQAMVIVP: 81 SecStr :------------------------------------------------------------------------------------H TT S EEEE S: ExpBur :------------------------------------------------------------------------------------ebeeeeeebbbbbbbb: queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQV: 394 : **** * * * * ** ** * * * **** ** * * ****** **** ** * * : 4ct4_B_1 82:TRELALQVSQICIQVSKHMGGAKV--MATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---DFVQIMEDIILTL: 176 SecStr :SHHHHHHHHHHHHHHTTTSSS E--EEE TTS HHHHHHHTTS SEEEE HHHHHHHHHTTSS TT EEEEESHHHHTST---TTHHHHHHHHTTS: ExpBur :eebbbebbbebbeebbeebeebeb--bbbbeeeeeeebeeebeeebbbbbbbbebbbebbeeebbebeebebbbbbbbbebbee---eeeeebeebbeeb: Contact : b queryA 395:TSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG: 494 : * * *** * * * * * * * ** * : 4ct4_B_1 177:P---KNRQILLYSATF-PLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYV----TER------------QKVHCLNT---------LFSRL------: 241 SecStr : ---TT EEEEEES - HHHHHHHHHH SS EEEE B TT EEEEEE ---- GG------------GHHHHHHH---------HHHHS------: ExpBur :b---eebbbbbbbbee-eeebeebbeebbeebeebebeeeeebeebebebbeb----eee------------ebbebbeb---------beeee------: Contact : bbbb queryA 495:EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD: 594 : * **** * * * ** * * * * * * *** ***** * *** * : 4ct4_B_1 242:----------QINQSIIFCNSSQRVELLAKKISQLG---------YSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPK: 322 SecStr :---------- SEEEEE SSHHHHHHHHHHHHHTT--------- EEEE TTS HHHHHHHHHHHHTTS SEEEE TT GGG TTEEEEEESS S: ExpBur :----------ebebbbbbbeeeeebeebbeebeeee---------bebeebbeebeeeebbebbeebeeeebebbbbbeebebbeebeebebbbbbbbbe: Contact : bbbb bb bb bb bb b queryA 595:EKQNYVHRIGRVGRAERMGLAISLVA: 620 : * ***** ** **** * : 4ct4_B_1 323:LAETYLHRIGRSGRFGHLGLAINLIT: 348 SecStr : HHHHHHHH B BTTB SEEEEEE : ExpBur :ebeebeebbbbbeeeeebebbbbbbb: |