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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [509 aa] | ATP-dependent RNA helicase MSS116 :MS116_YEAST | |
2 | b | B 1 (B) | polymer(polyribonucleotide) | 5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3' | 294P 295S(T) 296R 325G 326G 327V(T) 346T 347P 348G 349R 352D 358K 374G(R) 380Y(F) 514R(P) 515T 546H 547G 554R 572T 573D 574V (identity: 77.3 %/36.0 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:3i61_A_1 identity=36.0% |
queryA 1:MAAFSEMGVM-PEIAQAVEEMDWLLPTDIQAESIPLILGGGD--VLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYD: 97 : * ** ** * * * * * ** * * * ** *** ** ** * * * * : 3i61_A_1 70:LDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ-------------------------: 144 SecStr :HHHHHHHTSS HHHHHHHHTT SS HHHHHHHHHHH SSSEEEEEE TTS HHHHHHHHHHHHHHHTTTSST-------------------------: ExpBur :beebeeeebbeeebbebbeebeeeebeebbeebbeebbeeeebbbbbbbbbbbebbbbbbbbbbbbbbebeeeee-------------------------: queryA 98:RGSAFAIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLD: 197 : : 3i61_A_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 198:IDKGHVKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---KALIVEP: 294 : ** ** *: 3i61_A_1 145:------------------------------------------------------------------------------------------YMVKAVIVAP: 154 SecStr :------------------------------------------------------------------------------------------TS EEEE S: ExpBur :------------------------------------------------------------------------------------------ebbbbbbbbb: Contact : b queryA 295:SRELAEQTLNNIKQFKKYIDNPKLRE---LLIIGGV---AARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFL---VLDEADGLLSQGYSDFIN: 385 : * ** * * * * ** ** * ** ***** * * ** ****** ** * * : 3i61_A_1 155:TRDLALQIEAEVKKIHDM--NYGLKKYACVSLVGGTDFRAAMNKMNKLRP--NIVIATPGRLIDVLE--KYSNKFFRFVDYKVLDEADRLLEIGFRDDLE: 248 SecStr :SHHHHHHHHHHHHHHHHH-- GGGTTS EEEE TTS HHHHHHHHHHH --SEEEE HHHHHHHHH--HHHHHH TT EEEEETHHHHTSTTTHHHHH: ExpBur :bebbbbbbbebbeebbee--beebeebbbbbbbbeeeeeebbeebeeeeb--bbbbbbbebbbebbe--eebeebbeebebbbbbbbbebbeeebeeebe: Contact :bb bbbbbb bbbb b b b b queryA 386:RMHNQIPQVTS-DGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEM: 484 : * **** * ** ** * * * ** * *** : 3i61_A_1 249:TISGILNEKNSKSADNIKTLLFSATLDD-KVQKLANNIMNKKECLFLDTVDKNEPEAH--------------ERIDQSVVISEKF---------ANSIFA: 324 SecStr :HHHHHHHHH SS TT EEEEEESS T-HHHHHHTTT SSEEEEEESS TTS SS --------------TTEEEEEEEESST---------THHHHH: ExpBur :ebbebbbeebeeeeebbbbbbbbbbbee-ebeeebeebbebebbbbbbbbeeebebbb--------------eebebebbbbeeb---------bbbbbb: queryA 485:WSEAIKILKGEYAVRAIKEHKMD-QAIIFCRT----KIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGI: 579 : * ** *** **** * * * * ** * **** * **** *** : 3i61_A_1 325:AVEHIK--------KQIKERDSNYKAIIFAPTVKFTSFLCSILKNEF----------KKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM: 406 SecStr :HHHHHH--------HHHHHTTT EEEEE SSHHHHHHHHHHHHHHH----------TTTS EEEESTTS HHHHHHHHHHHHH SSEEEEE GGGTSS : ExpBur :bbebbe--------ebbeeeeeebbbbbbbebeebbebbbebbeebb----------eeebebbebbeeeebeebeebbeebeeeebbbbbbbbbbbbbb: Contact : bbbb bb b bbb queryA 580:DIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLV: 619 :* * * * * ** ***** * * : 3i61_A_1 407:DFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFI: 446 SecStr : TT EEEEES SSTTHHHHHHTTSS TT EEEEEEE: ExpBur :ebeebebbbbbbbbebbbbbbbbbbbbbbeeeebebbbbb: |