[pdbjlvh2]Protein Model on 7ytx_A_1_S

Protein Model on 7ytx_A_1_S_1 (TEMPLATE: 7ytx )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(TLR8_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [749 aa]	Toll-like receptor 8 :TLR8_HUMAN
2	b		S 1 (B)	non-polymer(JRI)	(2R,6R)-4-(8-cyanoquinolin-5-yl)-N-[(3S,4R)-4-fluoranylpyrrolidin-3-yl]-6-methyl-morpholine-2-carboxamide	494F 495F 518A 519Q 567Y (identity: 100.0 %/95.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7ytx_A_1 identity=95.4%

queryA        32:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELL: 131
                :*********************************************************************           ********************:
7ytx_A_1      10:RSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVXXXXXXXXXXXNGLNITDGAFLNLKNLRELL: 109
SecStr          :  SSSB  B SSSEEEE TTS  SS  TTS SSEEEEE  SS   EE TTTSTT TT  EE  TT S  -----------   EE TTTTTT TT  EEE:    
ExpBur          :eeebbbeeeeeeeebbebeebebeebbeebeeebbebebbebebeebeeebbeebeebebbbbbebbee-----------eebebeebbbeebeebebbb:    

queryA       132:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 231
                :****************************************************************************************************:
7ytx_A_1     110:LEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLFLSN: 209
SecStr          :  SS  SS  SS  TT  EEE  SS   EE HHHHTT TT  EEE  SSSSS SS SS EE TTTTTT TT  EEE  S   SS  SS  TT  EEE SS:    
ExpBur          :bbebebeebbeebbebbeebbbbebebeebeeebbbebeebebbebbbbbbeeeebeebebeebbbeebeebebbbbbbbbbeebbeebbeebeebebbb:    

queryA       232:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 331
                :****************************************************************************************************:
7ytx_A_1     210:TQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIASGA: 309
SecStr          :S   EE STTSSS TT  EEE TTSS   SS SS     SSS   EE TTTTSS TT  EEE  SS  S   TTTTTT S   EEE  SS  HHHHHS S:    
ExpBur          :bebeebeeeebeebeebbbbbbbbbbbbeeeeebeeeebeeeeebebeeebbeebeebeebbbbbbbbeebbeebbeebeebebbbbbbbebeebbeebe:    

queryA       332:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 431
                :****************************************************************************************************:
7ytx_A_1     310:FLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSENRIS: 409
SecStr          :GGGS SS  EEE  S   TT   SB    GGGTT TT  EEE  S   SEE GGGGGGGTT SS  EEE TT    EE GGGGTT SS  EEE TTS   :    
ExpBur          :bbeebeebeebbbbbbeeeeeeeeebebbeebeebeebebbbbbbbbbbebeeebbebbbebeebbbbbbbbbebeebebebbeebeebeebbbbebebe:    

queryA       432:PLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 531
                :****                         ***********************************************************************:
7ytx_A_1     410:PLVKXXXXXXXXXXXXXXXXXXXXXXXXXFDPHSNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPH: 509
SecStr          :    -------------------------  SSS SSS  S SS HHHHTTS EEE  SS  SS  TTSSTT    SEEE  SS    B  S TTTTS  :    
ExpBur          :beee-------------------------eeeeeeebbeeeebbeeebeeeeebbbbbebebeebbeebbeebbebbbbbbbebebebebebebbeebee:    
Contact         :                                                              bb                      bb            

queryA       532:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 631
                :****************************************************************************************************:
7ytx_A_1     510:VKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRY: 609
SecStr          : SEEE  SB  B  STTTTTT TT  EEE  SB  S   TTTSS  GGGGS SS  EEE  SS      S S    SS  EEE  SS HHHHHT TT TT:    
ExpBur          :bebbbbbebebbbbeeebbbbbeebebbbbbebebeeeeeeebbbbebbeebeebeebbbbebebebbeeeeebebebbeebbbbbbebbebbebeeeeb:    
Contact         :                                   b                                                                

queryA       632:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 731
                :****************************************************************************************************:
7ytx_A_1     610:ISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGF: 709
SecStr          :SSSSTT TT  EEE  SS  S   HHHHTTS TT SEEE  SS  S   GGGGGG SS  EEE  SS      S TTTT SS  EEE  SS      SSS:    
ExpBur          :bbbbebbeebebbbbbebebeebeeebbebbbebbeebbbbebebeebebebbeebeebeebbbeebebeebbeebbebbebbeebbbbebebeebbeeb:    

queryA       732:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 816
                :*************************************************************************************:
7ytx_A_1     710:LSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWMDEHLNVKIPRLVDVICASPGDQRGKSIVS: 794
SecStr          :SSSS   SEEE  SS      SSSS  SS     EEE  S  B  SSGGGTHHHHHHH TTSB   TTS  B SSTTT SS S  :    
ExpBur          :bbeebbbeebbbbebebeebeeebbeeeeebebeebbbbebebebeeebbebeebbeebeebebbebbebebeebeeeeeebbee:

Protein Model on 7ytx_A_1_S_1 (TEMPLATE: 7ytx )

Input Residue Numbers for Focused Sites