Protein Model on 7ytp_A_1_N_1 (TEMPLATE: 7ytp )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(TLR8_HUMAN) A 1 (A) polymer(polypeptide(L)) [731 aa] Toll-like receptor 7 :B3Y653_MACMU
2 b N 1 (A) non-polymer(JRI) (2R,6R)-4-(8-cyanoquinolin-5-yl)-N-[(3S,4R)-4-fluoranylpyrrolidin-3-yl]-6-methyl-morpholine-2-carboxamide 348Y(F) 349I(E) 350K(L) 351G(Q) 352S(V) 378V 403I(T) 405F (identity: 25.0 %/43.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7ytp_A_1 identity=43.5%
queryA        32:RSYPCDEK--KQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRE: 129
                :   ***         **  *    * * *       * * *  * *  *   **  *  *  *    *                * *    *  *  *  :
7ytp_A_1      28:KTLPCDVTLDVSKNHVIVDCTDKHLTEIPGGIPTNTTNLTLTINHIPDISPASFHRLVHLVEIDFRCNCXXXXXXXXXXXXPRRLQIKPRSFSGLTYLKS: 127
SecStr          :   SSEEEEETTTTEEEEE TT   SS  S   TT  EEE  SS   EE TTTTSS  S  EEE     ------------    EE TTSSTT TT  E:    
ExpBur          :eebebeeeeeeeeeebbbebeebebeebeeebeeebbebbbbebebeebeeebbeebeebebbbbeebe------------eeebebeeebbeebeebeb:    

queryA       130:LLLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLF: 228
                :* *  ***  ** *** **  ***  ***  * **    * *   ***  ***    *     **   *  ** *  ***  *    **  *** *  * :
7ytp_A_1     128:LYLDGNQLLEIPQGLPPSLQLLSLEANNIFSIRKEQLTELANIEILYLGQNCYYRNPCYVSYSIEKDAFLNLTKLKVLSLKDNNVTTVPTVLPSTLTELY: 227
SecStr          :EE TTS  SS  S   TT  EEE TTS   EE HHHHGGGTT  EEE  SSSSSSS  SS  EE TTTTTT TT  EEE TTS   S  SS  TT  EEE:    
ExpBur          :bebbbbebeebbeebbeebebbbbbebbbeebeeebbebbeebeebebbbbbbeeeebeeebeeeeebbeebeebebbbbbbbebeebbbebbeebbebb:    

queryA       229:LSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIA: 328
                :* *  *  * * **  *  *  ********** ****** **       *   **  ** *  * * * **      ****   *  ***  * *  ** :
7ytp_A_1     228:LYNNMIAEIQEDDFNNLNQLQILDLSGNCPRCYNAPFPCTPCKNNSPLQIPVNAFDALTELKVLRLHSNSLQHVPPRWFKNINNLQELDLSQNFLAKEIG: 327
SecStr          :  SS   B  TTSSSS SS  EEE TTSS   TT SS     GGG   B  TTSSSS  S  EEE TTS      GGGGSS TT  EEE  SSSTHHHHH:    
ExpBur          :beebebeebeeebbeebeebebbbbbbbbbbeeeeeeeeeeeeeeeebebeeebbebbeebebbebebbbbeebeeebbeebeebeebbbbebebbebbe:    

queryA       329:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSEN: 428
                :   **  ** *  ******     *    * *  ** * **  *  ***** **      **  * **    ** ****      *  *  *  * ** *:
7ytp_A_1     328:DAKFLHFLPNLIQLDLSFNFELQVYRASMNLSQAFSSLKSLKILRIRGYVFKELKSFQLSPLHNLQNLEVLDLGTNFIKIANLSMFKQFKRLKVIDLSVN: 427
SecStr          :H GGGGG TT  EEE  S   TT  BSS    GGGGG TT  EEE TT  BSEE SGGGGGGGG TT  EEE  SS   EE GGGGGS  S SEEE  SS:    
ExpBur          :ebebbeebeebeebbbbebeeeeeeeeebebbebbeebeebebbebebbbbeebeeebbebbbebeebebbbbbebebeebebbbbeebeebebbbbbeb:    
Contact         :                   bbbbb                         b                        b b                       

queryA       429:RISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQ--------------------------------------------------: 478
                : ***                                                                                                :
7ytp_A_1     428:KISP----------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 481
SecStr          :    ------------------------------------------------------------------------------------------------:    
ExpBur          :ebee------------------------------------------------------------------------------------------------:    

queryA       479:------CAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAG: 572
                :      *  **  **** ******    *  *    ***** *   * * * **       ***  *****     *  **  ***** * *****   *:
7ytp_A_1     482:XXXXS-CYKYGQTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLISQTLNGSEFQPLAELRYLDFSNNRLDLLHSTAFEELRKLEVLDISSNSHYFQSEG: 580
SecStr          :---- -GGGTS EEE TT S  S  TTTTTT TT SEEE TTS  EEE  S TT S SS  EEE  SSEEE   TTTT S TT  EEE  S HHHHHSSS:    
ExpBur          :----e-beebeebbbbbebebeebeeebbeebebbbbbbbbebebebebebebbebbeebebbbbbebebbbeeeebbebbeebebbbbbebeeebeeee:    

queryA       573:VTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHIN: 672
                : ** * *  *   *  *    * *   *     ** **  * * ** ** ** * ****   ** *  *  ** * * *   *   *   *  *  *   :
7ytp_A_1     581:ITHMLNFTKNLKVLQKLMMNDNDISSSTSR-TMESESLRTLEFRGNHLDVLWRDGDNRYLQLFKNLLKLEELDISKNSLSFLPSGVFDGMPPNLKNLSLA: 679
SecStr          :S   GGGGTT SS  EEE  S      SSS-   BSS  EEE  SS HHHHT TT  TTTTSSTTBTT  EEE  SS  SB  TTTGGGS TT  EEE T:    
ExpBur          :eebebebbeebeebeebbbbebebbbbebe-ebbbebbebbbbebbebeebbeeebeebbebbeebeebeebbbbebebeebbebbbebbbeebeebbbb:    

queryA       673:DNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGN: 772
                : * ** * *  *     ** ***  * *      **    **  * *  * *  *   **     *  ******    * *          * ** ** *:
7ytp_A_1     680:KNGLKSFIWEKLRYLKNLETLDLSHNQLTTVPERLSNCSRSLKNLILKNNQIRSLTKYFLQDAFQLRYLDLSSNKIQMIQKTSFPENVLNNLKMLLLHHN: 779
SecStr          :TS  SB  SGGGGG TT  EEE TT       S HHHH SS  B B TT       TTTTTT TT  EEE  S       TTTS HHHHTS  EEE  SS:    
ExpBur          :ebebeebebebbeebeebebbbbbebebeebbeebbebbeebeebebeebebeebbeebbeebebbeebbbbbbebeebbeebbbeebbeebebbbbbeb:    

queryA       773:PFECTCDIGDFRRWMDEHLNVKIPRLV-DVICASPGDQRGKSIVSL: 817
                : * ****   *  *   *  * ** *  ** *  **   * *  **:
7ytp_A_1     780:RFLCTCDAVWFVWWV-QHTEVTIPYLATDVTCVGPGAHKGQSVISL: 824
SecStr          :    SGGGHHHHHHH-TT     TTTTTTSB   SGGGTT BSS  :    
ExpBur          :ebebeeebeebeebb-eebebebeeebeebebebeeeeeeebbbee:

Input Residue Numbers for Focused Sites

ex) 2,15,123