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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(TLR8_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [731 aa] | Toll-like receptor 7 :B3Y653_MACMU | |
2 | b | C 1 (C) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 181C 182Y 186V(P) 187C 188E(Y) 189K(V) 190T(S) 212S(N) (identity: 37.5 %/43.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7ytp_A_1 identity=43.5% |
queryA 32:RSYPCDEK--KQNDSVIAECSNRRLQEVPQTVGKYVTELDLSDNFITHITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRE: 129 : *** ** * * * * * * * * * * ** * * * * * * * * * : 7ytp_A_1 28:KTLPCDVTLDVSKNHVIVDCTDKHLTEIPGGIPTNTTNLTLTINHIPDISPASFHRLVHLVEIDFRCNCXXXXXXXXXXXXPRRLQIKPRSFSGLTYLKS: 127 SecStr : SSEEEEETTTTEEEEE TT SS S TT EEE SS EE TTTTSS S EEE ------------ EE TTSSTT TT E: ExpBur :eebebeeeeeeeeeebbbebeebebeebeeebeeebbebbbbebebeebeeebbeebeebebbbbeebe------------eeebebeeebbeebeebeb: queryA 130:LLLEDNQLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYLAWNCYFNKVCEKT-NIEDGVFETLTNLELLSLSFNSLSHVPPKLPSSLRKLF: 228 :* * *** ** *** ** *** *** * ** * * *** *** * ** * ** * *** * ** *** * * : 7ytp_A_1 128:LYLDGNQLLEIPQGLPPSLQLLSLEANNIFSIRKEQLTELANIEILYLGQNCYYRNPCYVSYSIEKDAFLNLTKLKVLSLKDNNVTTVPTVLPSTLTELY: 227 SecStr :EE TTS SS S TT EEE TTS EE HHHHGGGTT EEE SSSSSSS SS EE TTTTTT TT EEE TTS S SS TT EEE: ExpBur :bebbbbebeebbeebbeebebbbbbebbbeebeeebbebbeebeebebbbbbbeeeebeeebeeeeebbeebeebebbbbbbbebeebbbebbeebbebb: Contact : bb bbbbb b queryA 229:LSNTQIKYISEEDFKGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAFQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYLVGEIA: 328 :* * * * * ** * * ********** ****** ** * ** ** * * * * ** **** * *** * * ** : 7ytp_A_1 228:LYNNMIAEIQEDDFNNLNQLQILDLSGNCPRCYNAPFPCTPCKNNSPLQIPVNAFDALTELKVLRLHSNSLQHVPPRWFKNINNLQELDLSQNFLAKEIG: 327 SecStr : SS B TTSSSS SS EEE TTSS TT SS GGG B TTSSSS S EEE TTS GGGGSS TT EEE SSSTHHHHH: ExpBur :beebebeebeeebbeebeebebbbbbbbbbbeeeeeeeeeeeeeeeebebeeebbebbeebebbebebbbbeebeeebbeebeebeebbbbebebbebbe: queryA 329:SGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGINFIKQIDFKLFQNFSNLEIIYLSEN: 428 : ** ** * ****** * * * ** * ** * ***** ** ** * ** ** **** * * * * ** *: 7ytp_A_1 328:DAKFLHFLPNLIQLDLSFNFELQVYRASMNLSQAFSSLKSLKILRIRGYVFKELKSFQLSPLHNLQNLEVLDLGTNFIKIANLSMFKQFKRLKVIDLSVN: 427 SecStr :H GGGGG TT EEE S TT BSS GGGGG TT EEE TT BSEE SGGGGGGGG TT EEE SS EE GGGGGS S SEEE SS: ExpBur :ebebbeebeebeebbbbebeeeeeeeeebebbebbeebeebebbebebbbbeebeeebbebbbebeebebbbbbebebeebebbbbeebeebebbbbbeb: queryA 429:RISPLVKDTRQSYANSSSFQRHIRKRRSTDFEFDPHSNFYHFTRPLIKPQ--------------------------------------------------: 478 : *** : 7ytp_A_1 428:KISP----------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 481 SecStr : ------------------------------------------------------------------------------------------------: ExpBur :ebee------------------------------------------------------------------------------------------------: queryA 479:------CAAYGKALDLSLNSIFFIGPNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASALTELSDLEVLDLSYNSHYFRIAG: 572 : * ** **** ****** * * ***** * * * * ** *** ***** * ** ***** * ***** *: 7ytp_A_1 482:XXXXS-CYKYGQTLDLSKNSIFFIKSSDFQHLSFLKCLNLSGNLISQTLNGSEFQPLAELRYLDFSNNRLDLLHSTAFEELRKLEVLDISSNSHYFQSEG: 580 SecStr :---- -GGGTS EEE TT S S TTTTTT TT SEEE TTS EEE S TT S SS EEE SSEEE TTTT S TT EEE S HHHHHSSS: ExpBur :----e-beebeebbbbbebebeebeeebbeebebbbbbbbbebebebebebebbebbeebebbbbbebebbbeeeebbebbeebebbbbbebeeebeeee: queryA 573:VTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLTELHIN: 672 : ** * * * * * * * * ** ** * * ** ** ** * **** ** * * ** * * * * * * * * : 7ytp_A_1 581:ITHMLNFTKNLKVLQKLMMNDNDISSSTSR-TMESESLRTLEFRGNHLDVLWRDGDNRYLQLFKNLLKLEELDISKNSLSFLPSGVFDGMPPNLKNLSLA: 679 SecStr :S GGGGTT SS EEE S SSS- BSS EEE SS HHHHT TT TTTTSSTTBTT EEE SS SB TTTGGGS TT EEE T: ExpBur :eebebebbeebeebeebbbbebebbbbebe-ebbbebbebbbbebbebeebbeeebeebbebbeebeebeebbbbebebeebbebbbebbbeebeebbbb: queryA 673:DNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNLLKTINKSALETKTTTKLSMLELHGN: 772 : * ** * * * ** *** * * ** ** * * * * * ** * ****** * * * ** ** *: 7ytp_A_1 680:KNGLKSFIWEKLRYLKNLETLDLSHNQLTTVPERLSNCSRSLKNLILKNNQIRSLTKYFLQDAFQLRYLDLSSNKIQMIQKTSFPENVLNNLKMLLLHHN: 779 SecStr :TS SB SGGGGG TT EEE TT S HHHH SS B B TT TTTTTT TT EEE S TTTS HHHHTS EEE SS: ExpBur :ebebeebebebbeebeebebbbbbebebeebbeebbebbeebeebebeebebeebbeebbeebebbeebbbbbbebeebbeebbbeebbeebebbbbbeb: queryA 773:PFECTCDIGDFRRWMDEHLNVKIPRLV-DVICASPGDQRGKSIVSL: 817 : * **** * * * * ** * ** * ** * * **: 7ytp_A_1 780:RFLCTCDAVWFVWWV-QHTEVTIPYLATDVTCVGPGAHKGQSVISL: 824 SecStr : SGGGHHHHHHH-TT TTTTTTSB SGGGTT BSS : ExpBur :ebebeeebeebeebb-eebebebeeebeebebebeeeeeeebbbee: |